GGtools-package	GGtools-package
bestCis	bestCis
checkCommonSNPs	makeCommonSNPs
chunksize	gwSnpTests
chunksize-class	gwSnpTests
cisRanges	cisRanges
cisScores	eqtlTests
cisSnpTests	cisSnpTests
cisTransDirector-class	eqtlTestsManager-class
coerce,cwSnpScreenResult,GRanges-method	trackSet-methods
coerce,cwSnpScreenResult,RangedData-method	trackSet-methods
coerce,multffManager,eqtlTestsManager-method	multffManager-class
degnerASE01	degnerASE01
diagffCC	diagffCC
eqtlTests	eqtlTests
eqtlTestsManager-class	eqtlTestsManager-class
ex6	ex6
exome_minp	exome_minp
geneRanges	geneRanges
geneTrack	geneTrack
getGRanges	getGRanges
getNamedLocs	getNamedLocs
GGtools	GGtools-package
gwSnpTests	gwSnpTests
gwSnpTests,formula,smlSet,cnumOrMissing,ANY-method	gwSnpTests
gwSnpTests,formula,smlSet,cnumOrMissing,missing-method	gwSnpTests
gwSnpTests,formula,smlSet,cnumOrMissing-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth,ANY-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth,chunksize-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth,missing-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth-method	gwSnpTests
hla2set	hla2set
hmceuB36.2021	hmceuB36.2021
ieqtlTests	eqtlTests
imphm3_1KG_20_mA2	imphm2_1KG_20
imphm3_1KG_20_mA5	imphm2_1KG_20
m20	m20
makeCommonSNPs	makeCommonSNPs
manhPlot	manhPlot
maxchisq	maxchisq-class
maxchisq-class	maxchisq-class
meqtlTests	eqtlTests
min_p_vals	maxchisq-class
min_p_vals,maxchisq,character,character,numeric-method	maxchisq-class
mkCisTransDirector	mkCisTransDirector
multffCT	multffCT
multffManager-class	multffManager-class
permEx	permEx
plot,cwSnpScreenResult,missing-method	plot-methods
plot,filteredGwSnpScreenResult,ANY-method	plot-methods
plot,filteredMultiGwSnpScreenResult,ANY-method	plot-methods
plot,snp.reg.imputation,missing-method	plot-methods
probeNames	eqtlTestsManager-class
probeNames,cisTransDirector-method	eqtlTestsManager-class
probeNames,eqtlTestsManager-method	eqtlTestsManager-class
residTests	gwSnpTests
residTests,cwSnpScreenResult,smlSet,formula,missing-method	gwSnpTests
scoresInRanges	scoresInRanges
show,cisTransDirector-method	eqtlTestsManager-class
show,eqtlTestsManager-method	eqtlTestsManager-class
show,maxchisq-method	maxchisq-class
show,metaVCF-method	vcf2sm
show,multffManager-method	multffManager-class
snp130locs	snp130locs
snpLocs20	snpLocs20
snpLocs_21	snpLocs20
strMultPop	strMultPop
topFeats	X2chunk
topFeats,genesym-method	X2chunk
topFeats,probeId-method	X2chunk
topFeats,rsid-method	X2chunk
topSnps	topSnps-methods
topSnps,cwSnpScreenResult-method	topSnps-methods
topSnps,gwSnpScreenResult-method	topSnps-methods
topSnps-methods	topSnps-methods
vcf2sm	vcf2sm
X2chunk	X2chunk
[,cisTransDirector,character,character,ANY-method	eqtlTestsManager-class
[,cisTransDirector,character,missing,ANY-method	eqtlTestsManager-class
[,cisTransDirector,missing,character,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,ANY,ANY,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,missing,probeId,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,rsid,missing,ANY,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,rsid,missing,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,rsid,probeId,ANY-method	eqtlTestsManager-class
[,multffManager,missing,probeId,ANY-method	multffManager-class
[,multffManager,rsid,missing,ANY-method	multffManager-class
[,multffManager,rsid,probeId,ANY-method	multffManager-class
