segmentSeq-package	segmentSeq-package
alignmentData	alignmentData-class
alignmentData-class	alignmentData-class
dim,alignmentData-method	alignmentData-class
dim,segData-method	segData-class
filterSegments	filterSegments
getCounts	getCounts
getPriors	getPriors
initialize,alignmentData-method	alignmentData-class
initialize,segData-method	segData-class
plotGenome	plotGenome
processAD	processAD
processTags	processTags
segData-class	segData-class
segmentSeq	segmentSeq-package
segmentSequences	segmentSequences
show,alignmentData-method	alignmentData-class
show,segData-method	segData-class
[,alignmentData,ANY,ANY-method	alignmentData-class
[,alignmentData-method	alignmentData-class
[,segData,ANY,ANY-method	segData-class
[,segData-method	segData-class
