Package: pint
Type: Package
Title: Pairwise INTegration of functional genomics data
Version: 1.0.0
Date: 2010-03-28
Author: Olli-Pekka Huovilainen <ohuovila@gmail.com> and Leo Lahti
        <leo.lahti@iki.fi>
Maintainer: Olli-Pekka Huovilainen <ohuovila@gmail.com>
Description: Probabilistic dependency modeling toolbox. Implementations
        for probabilistic PCA, factor analysis, and CCA models and
        their applications to dependency modeling. Particular tools for
        investigating the dependencies between paired copy number, gene
        expression and miRNA measurements from the same patients.
License: GPL (>= 2)
Collate: AllClasses.R AllGenerics.R DependencyModel-accessors.R
        ChromosomeArmModels-accessors.R ChromosomeModels-accessors.R
        GenomeModels-accessors.R show-methods.R plot-methods.R
        screen.cgh.mrna.R screen.cgh.mir.R calculate.genome.R
        calculate.chr.R calculate.arm.R pick.chr.arm.R fixed.window.R
        iterative.window.R z.effects.R W.effects.R z.expectation.R
        fit.dependency.model.R fit.cgh.mrna.byname.R
        fit.cgh.mir.byname.R centerData.R dependency.score.R
        calc.pcca.R solve.w.R calc.pfa.R initialize2.R
        calc.pcca.with.isotropic.margins.R W.cca.EM.R set.M.isotropic.R
        update.phi.isotropic.R set.M.full.R set.beta.fullcov.R
        calc.ppca.R ppca.calculate.R matrix.sqrt.R
        simCCA.optimize.fullcov.EM.R optimize.fullcov.R update.phi.EM.R
        cost5.R simCCA.optimize.R optimize.W.R set.M.R set.beta.R
        get.W.R update.phi.R cost.W.R update.phi.EM.simcca.R
        optimize.simCCA.W.R sparse.window.R calculate.arm.sparse.R
        calculate.chr.sparse.R calculate.genome.sparse.R pint.data.R
        pint.match.R
LazyLoad: yes
Depends: mvtnorm, methods, graphics
biocViews: aCGH, GeneExpression, Genetics, DifferentialExpression,
        Microarray
Packaged: 2010-04-23 01:49:04 UTC; biocbuild
Built: R 2.11.0; ; 2010-04-23 07:49:23 UTC; windows
