Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.

Documentation for package ‘crlmm’ version 1.6.6

crlmm-package	Genotype Calling via CRLMM Algorithm
batch	Function to extract batch information.
batch-method	Function to extract batch information.
celDates	Extract dates from the cel file header
CNSetLM	CNSetLM class
CNSetLM-class	CNSetLM class
copyNumber-method	CNSetLM class
crlmm	Genotype oligonucleotide arrays with CRLMM
crlmm2	Genotype oligonucleotide arrays with CRLMM
crlmmCopynumber	Locus- and allele-specific estimation of copy number
crlmmCopynumber2	Locus- and allele-specific estimation of copy number
crlmmIllumina	Genotype Illumina Infinium II BeadChip data with CRLMM
ffdf-class	Miscellaneous classes
genotype	Preprocessing and genotyping of Affymetrix arrays.
genotype2	Preprocessing and genotyping of Affymetrix arrays.
list-class	Miscellaneous classes
lM	CNSetLM class
lM-method	CNSetLM class
lM<--method	CNSetLM class
open-method	CNSetLM class
readIdatFiles	Reads Idat Files from Infinium II Illumina BeadChips
sample.CNSetLM	Dataset of class 'CNSetLM'
show-method	CNSetLM class
snprma	Preprocessing tool for SNP arrays.
snprma2	Preprocessing tool for SNP arrays.
totalCopyNumber	Method for computing total copy number from either ff
totalCopyNumber-method	Method for computing total copy number from either ff
totalCopyNumber-methods	Method for computing total copy number from either ff
[-method	CNSetLM class