db41b6830c467d0b42c7918826408bd3 *DESCRIPTION
ab2f2a0c80b543072dd81e8e2352224d *INDEX
67ec9006852aab9eb45a716d5c4ae3a5 *Meta/Rd.rds
113c7bdc5db8408ffc36849aac2d9fa2 *Meta/data.rds
45dce217b96da055f002419020176006 *Meta/hsearch.rds
1c5c57ac800f2ae61879af649f8b0d1c *Meta/links.rds
722d544866e3f4cfcf153606760228d4 *Meta/nsInfo.rds
8b6149b0d6b0bcc32eda7fefee8e0cbf *Meta/package.rds
aa781d22785194a04a6df23250ec7111 *Meta/vignette.rds
3228338afefb3b7b259521549182d357 *NAMESPACE
f07d3015c4220dea7a7be8c741d2985b *R/ScISI
09ea3358dc926739e4ddd5e236226787 *R/ScISI.rdb
6eaa45112dc136deedc14e01011c78e4 *R/ScISI.rdx
8a636eee22ab2f6601d65e83cd679ef9 *Scripts/C1G.rda
61f5b7b6e87d463036d9ed068d6d9fce *Scripts/Comments
00e6f2356b5f5116a6800cd3ff0c0f47 *Scripts/Comments2
e404aade49412593e4ace87b1acb6bdf *Scripts/ckCrystStruct.R
2e961514e6001e0e923deb44c174c6e3 *Scripts/createMipsY2HMatrix.R
f8578fd7b58a182ebcae67656bfcf129 *Scripts/createScISI.R
d6c08c3d5a96fa6d86175c7724074eca *Scripts/createScISIC.R
c9418aff1f9aa03c50311a15de9d3d04 *Scripts/creatingScISI.Rnw
3e5b729cbe4340f87c0880711155cc9a *Scripts/estGavin02.R
07e5475297242ee0065e1158afa16be4 *Scripts/estGavin06.R
0adf3e106f855193b0f70d3ca30139a1 *Scripts/estHo02.R
a8b4bb7c2779ed145422800304f32e6f *Scripts/estKrogan04.R
92a152170ac52d9ba324c5392b7d55af *Scripts/estKrogan06.R
ea7733524feaf47622ce949aa227844d *Scripts/estimateComp.R
6b3116c9133cf30b653d3e8648362efe *Scripts/getLocOrfs.Rnw
7d1b309b80cf22241930adaf5b392991 *Scripts/getMipsY2HInfo.R
6416448f931f0c7b6c951923943d9b88 *Scripts/graphStatistics.Rnw
ace99f430b33eb54333a65fac4f796a1 *Scripts/notesMips.R
a13b57441581b714eb014ce828bc6985 *Scripts/notesOtherComps
c0e07acaf95a2a148a403bd7006fddcf *Scripts/sim.R
7a080df2e2afa524baede1b532388d26 *Scripts/test1.R
19cdf9b416351d8d0c898b7186bf92af *TODO/CrystalStructures
e2a2027186190b8ef382cad1b366b82e *TODO/Validate
0f75f57b944fc18b6c707593bacae1a3 *data/ScISI.rda
708f98074f00e72294982ebe6274f782 *data/ScISIC.rda
4b5bbb1e51e712e6d00fd715145cd71a *data/ScISIverified.R
d75ad75e7807110d3f585481e055853a *data/ScISIverified.rda
a59829b65ee4070dd26c2baa75b0b507 *data/arp23.rda
6ed06eaf86f728b3e933695fef40258a *data/arp23G.rda
327f60f967e7bc93f1d6d22667d07c43 *data/arp23Orf.rda
7efc642ad05636f053cb26de5f9463d6 *data/arp23Y2HG.rda
efe56ea4e4458362e1ad582ea7a0e1e6 *data/cfia.rda
841c4b2256826ef30a9c5846e88cdd24 *data/cfiaOrf.rda
f2de90bdd270576e56abfc667b908d9f *data/dataS.rda
f1623f2c0db362a1dbc8e6db5c172898 *data/eAt.rda
851584cdc7411fef0993c6af33049e44 *data/eAt2.rda
966e07d38d5bf1627897eb8a9b0f9423 *data/egEBI16112.rda
d3ac271760fd2d67529582cef31b2f49 *data/expStats.rda
c20c1caae157bca0531bb4f2ed53daf5 *data/gavin2mergeMG.rda
d4014f0d6b415b16132554a92f4c4b61 *data/ho2mergeMGG.rda
4fbbc78b1acd9c9fad58eae3eb959080 *data/krogan2mergeMGGH.rda
aa82f4ef5d00e45ef8d7cbb05c09d936 *data/locScISI.rda
900948fed4fbb36d3bc1e583c6a4d73f *data/mapping2SysG.rda
518085a2da1db6fdf9945a78690e31d5 *data/mappingsG.rda
f16b32a986ff539f231b22eceeaafcac *data/mips2go.rda
8a1502fd6fad6890a916534f26506b0f *data/nAt.rda
cc67465e6ea5932a20b6d1fffca3a6dc *data/nAtMap.rda
979b060c944df8b69ceaed7e30d91e2f *data/nonGenes.rda
e568983d34787164582da3df458561c7 *data/nucComp.rda
4920b318f812199a4fbff9c4c0c75a7a *data/redundantM.rda
b3b53c2317a4674bd0857a760dce3b3b *data/subCompM.rda
5e407e590704007f28e6b8d6eefc1db3 *data/unwanted.rda
74a4d72b03fca599ba69412576161938 *data/xtraGO.rda
fd4ffd157fbb5304b5190620af1876fd *doc/Rplots.pdf
7dffc1ba815f7a4590b1412c30943076 *doc/bioc.bib
a41c6ea29a44ddc077c1ba6e36d03e29 *doc/index.html
4c19937f0112500844baa4c291b610ee *doc/vignette.R
36d65867e2d757b95cb9d1bed9aa74b3 *doc/vignette.Rnw
07b85e7e20db35391345607721ee35ee *doc/vignette.pdf
3e00e918b383700d3c987da731529271 *extdata/Arp2_3_complex.jpg
3e00e918b383700d3c987da731529271 *extdata/Arp2_3_complex.png
05375178bc80b0e12268c182291cc15a *extdata/PPI_141105.tab.gz
0a5c1e07cb76195e0aade591119413e3 *extdata/complexcat.scheme
6b2ce5296b7f82656af371fd82a12aae *extdata/complexcat.scheme.edit
570c688db449835f5135d7a5385c049e *extdata/complexcat_data_14112005.gz
f81d10292fc810f3f19a5e9fdec6ce6a *extdata/complexcat_data_18052006.gz
24c48092b6d1cbcda77a2553dc7ac612 *extdata/complexcat_data_20062005.gz
200ca2aca14b12de19a6dcaa7238984a *extdata/evidencecat.scheme
a28f70ebb3bc4b8732c8bec2da5d9d79 *extdata/graphs/Readme
225f66c316032d89cc13263129303a5e *extdata/graphs/arp23AM.rda
4c6cf6010cd119d85f61a8b7c4e3ff88 *extdata/graphs/arp23BP.rda
6cb1bc35a26c00a0d29a55a2d73819fd *extdata/graphs/arp23BPG.rda
c1b2a2d3cdf922cb8188f13d2338830d *extdata/graphs/arp23CMG.rda
82bd2c84c5055eff08a82ba5bdb4c6f3 *extdata/graphs/arp23CMM.rda
aabec5837baf893ea62032d43ea3f854 *extdata/graphs/arp23G.rda
9b8f423165e92980afc0fc6bf6f84e99 *extdata/graphs/cfiaAM.rda
37d1472fafbcaa1dfb7099d84992b67c *extdata/graphs/cfiaCMG.rda
9a2b1117960175884c3210f6b05e5746 *extdata/graphs/cfiaCMM.rda
233cc23dd171f9589ade6cf6a0d712d8 *extdata/graphs/cfiaG.rda
cf003a9b90823c91f6604750d792d058 *extdata/graphs/ppi1.rda
d10c0eb4eaa5b5e8d2867e5e2d32af40 *extdata/graphs/ppi1G.rda
3014427a4957aa6d40d511161d5a927a *extdata/graphs/ppi2.rda
589b6347c9923c33b9e8e76a33eb93b4 *extdata/graphs/ppi2G.rda
ca9989c9b6b7ce20051dc7fa3f449b82 *extdata/localization/allOrfData.txt
32583a85ebe0356656c57107eaad2993 *extdata/pathway/biochemical_pathways.tab
ad22462813c63865f71ed40c0e1e3c21 *extdata/pathway/keggM.rda
758522d65fff0f8e08d62ce677d24baf *extdata/pathway/sgdPathM.rda
f9a2fee5ff6790dd539944e98e145808 *extdata/protein_network_large.jpg
961c6fe35d4814adb898dca60c79b176 *help/AnIndex
0651036b2e7cbae358c69b5952a4d6a6 *help/ScISI.rdb
c1144f4c8616617e941c447e392370a9 *help/ScISI.rdx
c9e97b706872e23fb9665b3f4b79fd29 *help/aliases.rds
8c21163352790ed5164693980cf68890 *help/paths.rds
52192b534f04fd056d4e72864f6f55a0 *html/00Index.html
