GRanges-class           GRanges objects
GRangesList-class       GRangesList objects
GappedAlignments-class
                        GappedAlignments objects
cigar-utils             CIGAR utility functions
findOverlaps,GRanges,GRanges-method
                        GRanges and GRangesList Interval Overlaps
seqnames                Accessing the sequence names and lengths stored
                        in an object
strand                  Accessing strand information
union,GRanges,GRanges-method
                        GRanges and GRangesList Set and Parallel Set
                        Operations
