GeneSelector-package	GeneSelector-package
AdjustPvalues	internals
AggregatedRanking	AggregatedRanking-class
AggregatedRanking-class	AggregatedRanking-class
AggregateMC	AggregateMC
AggregateMC,RepeatedRanking-method	AggregateMC
AggregateMC-methods	AggregateMC
AggregatePenalty	AggregatePenalty
AggregatePenalty,RepeatedRanking-method	AggregatePenalty
AggregatePenalty-methods	AggregatePenalty
AggregateSimple	AggregateSimple
AggregateSimple,RepeatedRanking-method	AggregateSimple
AggregateSimple-methods	AggregateSimple
AggregateSVD	AggregateSVD
AggregateSVD,RepeatedRanking-method	AggregateSVD
AggregateSVD-methods	AggregateSVD
BootMatrix	BootMatrix-class
BootMatrix-class	BootMatrix-class
combn	internals
dispersion	dispersion,RepeatedRanking
dispersion,RepeatedRanking-method	dispersion,RepeatedRanking
FoldMatrix	FoldMatrix-class
FoldMatrix-class	FoldMatrix-class
FoldMatrix-method	FoldMatrix-class
GeneRanking	GeneRanking-class
GeneRanking-class	GeneRanking-class
GenerateBootMatrix	GenerateBootMatrix
GenerateBootMatrix,ExpressionSet,character-method	GenerateBootMatrix
GenerateBootMatrix,missing,factor-method	GenerateBootMatrix
GenerateBootMatrix,missing,numeric-method	GenerateBootMatrix
GenerateBootMatrix-methods	GenerateBootMatrix
GenerateFoldMatrix	GenerateFoldMatrix
GenerateFoldMatrix,ExpressionSet,character-method	GenerateFoldMatrix
GenerateFoldMatrix,missing,factor-method	GenerateFoldMatrix
GenerateFoldMatrix,missing,numeric-method	GenerateFoldMatrix
GenerateFoldMatrix-methods	GenerateFoldMatrix
GeneSelector	GeneSelector
GeneSelector,list-method	GeneSelector
GeneSelector-methods	GeneSelector
GeneSelectorOutput	GeneSelectorOutput-class
GeneSelectorOutput-class	GeneSelectorOutput-class
getLambda	internals
GetStabilityDistance	GetStabilityDistance
GetStabilityDistance,RepeatedRanking-method	GetStabilityDistance
GetStabilityDistance-methods	GetStabilityDistance
GetStabilityOverlap	GetStabilityOverlap
GetStabilityOverlap,RepeatedRanking-method	GetStabilityOverlap
GetStabilityOverlap-methods	GetStabilityOverlap
GetStabilityUnion	GetStabilityUnion
GetStabilityUnion,RepeatedRanking-method	GetStabilityUnion
GetStabilityUnion-methods	GetStabilityUnion
HeatmapRankings	HeatmapRankings
HeatmapRankings,RepeatedRanking-method	HeatmapRankings
HeatmapRankings-methods	HeatmapRankings
MergeMethods	MergeMethods
MergeMethods,list-method	MergeMethods
MergeMethods-methods	MergeMethods
MergeRankings	RepeatedRanking-class
MergeRankings,RepeatedRanking,RepeatedRanking-method	RepeatedRanking-class
MergeRankings-methods	RepeatedRanking-class
overlap	internals
plot,GeneSelectorOutput,missing-method	GeneSelectorOutput-class
plot,RepeatedRanking	RepeatedRanking-class
plot,RepeatedRanking,missing-method	RepeatedRanking-class
plot,StabilityOverlap,missing-method	StabilityOverlap-class
plot,StabilityUnion,missing-method	StabilityUnion-class
RankingBaldiLong	RankingBaldiLong
RankingBaldiLong,ExpressionSet,character-method	RankingBaldiLong
RankingBaldiLong,matrix,factor-method	RankingBaldiLong
RankingBaldiLong,matrix,numeric-method	RankingBaldiLong
RankingBaldiLong-methods	RankingBaldiLong
RankingEbam	RankingEbam
RankingEbam,ExpressionSet,character-method	RankingEbam
RankingEbam,matrix,factor-method	RankingEbam
RankingEbam,matrix,numeric-method	RankingEbam
RankingEbam-methods	RankingEbam
RankingFC	RankingFC
RankingFC,ExpressionSet,character-method	RankingFC
RankingFC,matrix,factor-method	RankingFC
RankingFC,matrix,numeric-method	RankingFC
RankingFC-methods	RankingFC
RankingFoxDimmic	RankingFoxDimmic
RankingFoxDimmic,ExpressionSet,character-method	RankingFoxDimmic
RankingFoxDimmic,matrix,factor-method	RankingFoxDimmic
RankingFoxDimmic,matrix,numeric-method	RankingFoxDimmic
RankingFoxDimmic-methods	RankingFoxDimmic
RankingLimma	RankingLimma
RankingLimma,ExpressionSet,character-method	RankingLimma
RankingLimma,matrix,factor-method	RankingLimma
RankingLimma,matrix,numeric-method	RankingLimma
RankingLimma-methods	RankingLimma
RankingPermutation	RankingPermutation
RankingPermutation,ExpressionSet,character-method	RankingPermutation
RankingPermutation,matrix,factor-method	RankingPermutation
RankingPermutation,matrix,numeric-method	RankingPermutation
RankingPermutation-methods	RankingPermutation
RankingSam	RankingSam
RankingSam,ExpressionSet,character-method	RankingSam
RankingSam,matrix,factor-method	RankingSam
RankingSam,matrix,numeric-method	RankingSam
RankingSam-methods	RankingSam
RankingShrinkageT	RankingShrinkageT
RankingShrinkageT,ExpressionSet,character-method	RankingShrinkageT
RankingShrinkageT,matrix,factor-method	RankingShrinkageT
RankingShrinkageT,matrix,numeric-method	RankingShrinkageT
RankingShrinkageT-methods	RankingShrinkageT
RankingSoftthresholdT	RankingSoftthresholdT
RankingSoftthresholdT,ExpressionSet,character-method	RankingSoftthresholdT
RankingSoftthresholdT,matrix,factor-method	RankingSoftthresholdT
RankingSoftthresholdT,matrix,numeric-method	RankingSoftthresholdT
RankingSoftthresholdT-methods	RankingSoftthresholdT
RankingTstat	RankingTstat
RankingTstat,ExpressionSet,character-method	RankingTstat
RankingTstat,matrix,factor-method	RankingTstat
RankingTstat,matrix,numeric-method	RankingTstat
RankingTstat-methods	RankingTstat
RankingWelchT	RankingWelchT
RankingWelchT,ExpressionSet,character-method	RankingWelchT
RankingWelchT,matrix,factor-method	RankingWelchT
RankingWelchT,matrix,numeric-method	RankingWelchT
RankingWelchT-methods	RankingWelchT
RankingWilcEbam	RankingWilcEbam
RankingWilcEbam,ExpressionSet,character-method	RankingWilcEbam
RankingWilcEbam,matrix,factor-method	RankingWilcEbam
RankingWilcEbam,matrix,numeric-method	RankingWilcEbam
RankingWilcEbam-methods	RankingWilcEbam
RankingWilcoxon	RankingWilcoxon
RankingWilcoxon,ExpressionSet,character-method	RankingWilcoxon
RankingWilcoxon,matrix,factor-method	RankingWilcoxon
RankingWilcoxon,matrix,numeric-method	RankingWilcoxon
RankingWilcoxon-methods	RankingWilcoxon
RepeatedRanking	RepeatedRanking-class
RepeatedRanking-class	RepeatedRanking-class
RepeatRanking	RepeatRanking
RepeatRanking,GeneRanking,BootMatrix,missing,missing,missing-method	RepeatRanking
RepeatRanking,GeneRanking,FoldMatrix,ANY,missing,missing-method	RepeatRanking
RepeatRanking,GeneRanking,missing,missing,ANY,ANY-method	RepeatRanking
RepeatRanking-methods	RepeatRanking
samplingcontrol	samplingcontrol
SelectedGenes	GeneSelectorOutput-class
SelectedGenes,GeneSelectorOutput-method	GeneSelectorOutput-class
SelectedGenes-methods	GeneSelectorOutput-class
show,AggregatedRanking-method	AggregatedRanking-class
show,BootMatrix-method	BootMatrix-class
show,FoldMatrix-method	FoldMatrix-class
show,GeneRanking-method	GeneRanking-class
show,GeneSelectorOutput-method	GeneSelectorOutput-class
show,RepeatedRanking-method	RepeatedRanking-class
show,StabilityDistance-method	StabilityDistance-class
show,StabilityOverlap-method	StabilityOverlap-class
show,StabilityUnion-method	StabilityUnion-class
StabilityDistance	StabilityDistance-class
StabilityDistance-class	StabilityDistance-class
StabilityOverlap	StabilityOverlap-class
StabilityOverlap-class	StabilityOverlap-class
StabilityUnion	StabilityUnion-class
StabilityUnion-class	StabilityUnion-class
summary,BootMatrix-method	BootMatrix-class
summary,FoldMatrix-method	FoldMatrix-class
summary,GeneRanking-method	GeneRanking-class
summary,StabilityDistance-method	StabilityDistance-class
summary,StabilityOverlap-method	StabilityOverlap-class
toplist	toplist-methods
toplist,AggregatedRanking-method	AggregatedRanking-class
toplist,GeneRanking-method	GeneRanking-class
toplist,GeneSelectorOutput-method	GeneSelectorOutput-class
toplist,RepeatedRanking-method	RepeatedRanking-class
toplist-methods	toplist-methods
toydata	toydata
unioncount	internals
