GGbase-package          GGbase Package Overview
MAFfilter               restrict SNP in an smlSet to range of minor
                        allele frequencies (MAF)
SessionInfo-class       Class "SessionInfo" -- objects to help stamp an
                        output with information on session state
featureFilter           remove unannotated or undesired features from
                        an smlSet instance
genesym-class           Class "genesym" and other casting classes
gwSnpScreenResult-class
                        Class "gwSnpScreenResult" -- containers for
                        GGtools gwSnpScreen method outputs and allied
                        objects
make_smlSet             create an smlSet instance from components
multiCisTestResult-class
                        Class "multiCisTestResult"
plot_EvG-methods        formal method for visualizing expression
                        distributions vs genotype
smlSet-class            Documentation on S4 class "smlSet" an
                        eSet-derived container for snpMatrix lists,
                        allowing efficient combination of SNP chip
                        genotyping with microarray expression data, and
                        allied classes
smlSummary              class and function to summarize frequency
                        information on genotypes in an smlSet
snpLocs.Hs              SNP location accessor
snpsNear                obtain list of rs numbers for snps near a gene
