MAplot-methods          MA plots
basecontent             Sequence Base Contents
basicRMA                Simplified Interface to RMA
boxplot                 Boxplot
crlmm                   Genotype Calls
getContainer            Get container information for NimbleGen Tiling
                        Arrays.
getCrlmmSummaries       Function to get CRLMM summaries saved to disk
getNgsColorsInfo        Helper function to extract color information
                        for filenames on NimbleGen arrays.
getX                    Accessors for physical array coordinates.
hist                    Density estimate
image                   Display a Color Image
justSNPRMA              Summarization of SNP data
list.celfiles           List CEL/XYS files
mm                      Accessors and replacement methods for the
                        PM/MM/BG matrices.
oligo-package           The oligo package: a tool for low-level
                        analysis of oligonucleotide arrays
plotM-methods           Methods for Log-Ratio plotting
read.celfiles           Parser to CEL files
read.xysfiles           Parser to XYS files
readSummaries           Read summaries generated by crlmm
rma                     RMA - Robust Multichip Average algorithm
sequenceDesignMatrix    Create design matrix for sequences
snprma                  Preprocessing SNP Arrays
