Package: crlmm
Type: Package
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for
        Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Version: 1.4.5
Date: 2010-02-22
Author: Rafael A Irizarry, Benilton S Carvalho <bcarvalh@jhsph.edu>,
        Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie
        <mritchie@wehi.EDU.AU>
Maintainer: Benilton S Carvalho <bcarvalh@jhsph.edu>, Robert Scharpf
        <rscharpf@jhsph.edu>, Matt Ritchie <mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0
        arrays, as well as a copy number tool specific to 6.0.
License: Artistic-2.0
Depends: methods, Biobase (>= 2.5.5), R (>= 2.10.0)
Imports: affyio, preprocessCore, utils, stats, genefilter, splines,
        mvtnorm, oligoClasses, ellipse, methods, SNPchip
Suggests: hapmapsnp5, hapmapsnp6, genomewidesnp5Crlmm (>=
        1.0.2),genomewidesnp6Crlmm (>= 1.0.2), snpMatrix, VanillaICE
        (>= 1.7.8), GGdata
Collate: AllClasses.R AllGenerics.R methods-ABset.R
        methods-CopyNumberSet.R methods-CrlmmSetList.R methods-eSet.R
        methods-SnpSet.R cnrma-functions.R crlmm-functions.R
        crlmm-illumina.R snprma-functions.R utils.R zzz.R
LazyLoad: yes
biocViews: Microarray, Preprocessing, SNP, Bioinformatics,
        CopyNumberVariants
Packaged: 2010-02-23 12:04:25 UTC; biocbuild
Built: R 2.10.1; universal-apple-darwin8.11.1; 2010-02-23 15:58:48 UTC; unix
