methylumi-package	methylumi-package
betas	generics
betas,MethyLumiSet-method	MethyLumiSet-class
betas<-	generics
betas<-,MethyLumiSet,matrix-method	MethyLumiSet-class
boxplot,MethyLumiSet-method	MethyLumiSet-class
combine,MethyLumiSet,MethyLumiSet-method	MethyLumiSet-class
controlTypes	qcplot
controlTypes,MethyLumiQC-method	MethyLumiQC-class
controlTypes,MethyLumiSet-method	MethyLumiSet-class
corplot,MethyLumiSet-method	MethyLumiSet-class
exprs,MethyLumiQC-method	MethyLumiQC-class
exprs,MethyLumiSet-method	MethyLumiSet-class
exprs<-,MethyLumiQC,matrix-method	MethyLumiQC-class
exprs<-,MethyLumiSet,matrix-method	MethyLumiSet-class
extractBarcodeAndPosition	extractBarcodeAndPosition
getAssayDataNameSubstitutions	getAssayDataNameSubstitutions
getHistory	generics
getHistory,MethyLumiSet-method	MethyLumiSet-class
hist,MethyLumiSet-method	MethyLumiSet-class
initialize,MethyLumiQC-method	MethyLumiQC-class
initialize,MethyLumiSet-method	MethyLumiSet-class
methylated	generics
methylated,MethyLumi-method	MethyLumi-class
methylated,MethyLumiSet-method	MethyLumiSet-class
methylated<-	generics
methylated<-,MethyLumi,matrix-method	MethyLumi-class
methylated<-,MethyLumiSet,matrix-method	MethyLumiSet-class
methylumi	methylumi-package
MethyLumi-class	MethyLumi-class
MethyLumiQC-class	MethyLumiQC-class
methylumiR	methylumiR
MethyLumiSet-class	MethyLumiSet-class
mldat	mldat
normalizeMethyLumiSet	normalizeMethyLumiSet
pairs,MethyLumiSet-method	MethyLumiSet-class
plotSampleIntensities	plotSampleIntensities
plotSampleIntensities,MethyLumiSet-method	MethyLumiSet-class
pvals	generics
pvals,MethyLumi-method	MethyLumi-class
pvals<-	generics
pvals<-,MethyLumi,matrix-method	MethyLumi-class
QCdata	generics
QCdata,MethyLumiSet-method	MethyLumiSet-class
QCdata<-	generics
QCdata<-,MethyLumiSet,MethyLumiQC-method	MethyLumiSet-class
QCDataOrNULL-class	MethyLumiQC-class
qcplot	qcplot
qcplot,Methylumi-method	MethyLumi-class
qcplot,MethyLumiQC-method	MethyLumiQC-class
qcplot,MethyLumiSet-method	MethyLumiSet-class
show,MethyLumiSet-method	MethyLumiSet-class
summary,MethyLumi-method	MethyLumi-class
unmethylated	generics
unmethylated,MethyLumi-method	MethyLumi-class
unmethylated,MethyLumiSet-method	MethyLumiSet-class
unmethylated<-	generics
unmethylated<-,MethyLumi,matrix-method	MethyLumi-class
unmethylated<-,MethyLumiSet,matrix-method	MethyLumiSet-class
[,MethyLumiSet-method	MethyLumiSet-class
