| spYCCmeta {yeastCC} | R Documentation |
data.frame instance with metadata on 800 genes
data(spYCCmeta)
A data frame with 800 observations on the following 75 variables.
Process4-nitroquinoline-N-oxide resistance ATP synthesis ...Function(1->6)-beta-glucan synthase subunit (putative) Glc7p regulatory subunit ...XPeakG1 G2/M M/G1 S S/G2Phase.OrderCluster.OrderORFYAL022C YAL040C YAL053W YAL067C YAR003W YAR007C ...YPDAAD10 ACE2 ADA2 ADK2 AFR1 AGA1 AGA2 AGP1 ...SGDAAD10 ACE2 ADA2 ADK2 AFR1 AGA1 AGA2 ...YPD.1YPDSGD.1SGDMIPSMIPSn1n2GeomeanAbsoluteg1g2Geomean.1Absolute.1Deletionirrelevant lethal undocumented viableKnown.Known New New Description Inhibitor of Cdc28p/Cln1p and Cdc28p/Cln2p complexes involved in cell cycle arrest for mating 1,3-beta-D-glucan synthase 3'-Phosphoadenylylsulfate reductase; part of the sulfate assimilation pathway ...Aggregate.ScorePhaseNo..ElementsMost.Relevant.Promoter.ElementsAATAGATGACCCGATTTGGAAAAAGGTAAACAACAATG ATTTGATTGCCGAAAGAGGCAAAAC GTAAATAGGTTGT C 156 TCTGCCAGCCAA C 253 AAAGCCAGCCAT C 256 TATGCCAGCCAA C 276 AAGGCCAGCCTC C 293 TTGACCAGCTAA ...X.1ATATAGCGACCGAATCAGGAAAAG GTCAACAACGAAG C 102 CGAGCCAGCATT C 252 AAGACCAGCATG C 301 AGTGCCAGCAAA C 496 GAAGCCAGCACA C 550 GCGGCCAGCAAC c 106 attACGCGaaaat c 112 aaaACGCGagaaa c 121 ggaACGCGacgc ...X.2C 125 GCAACCAGCTCT C 146 CAAGCCAGCCAT C 195 CGCACCAGCAAC C 212 TATACCAGCGTT C 245 TAAACCAGCGCA C 402 TATGCCAGCAAA c 112 ttaACGCGatcga c 115 agtACGCGaaagg c 123 acaACGCGaacac c 127 gtgACGCGaaaaa ...X.3C 307 AAGACCAGCATT c 163 ctgACGCGcgaaa c 190 aatACGCGagaaa c 220 tagACGCGcctta c 241 cgaACGCGaaact c 275 aaaACGCGaccgt c 282 aagACGCGatttt c 289 attACGCGcatta c 290 aggACGCGaaact ...X.4C 200 CAAACCAGCATC c 117 gtcACGCGaaaaa c 314 cctACGCGaaagt c 338 caaACGCGaaaaa c 359 acgACGCGccttc c 382 gttACGCGaagtc c 384 tcaACGCGaattt c 397 aaaACGCGaaaac c 440 gtgACGCGcggtt ...X.5C 306 GGAGCCAGCGCG c 467 accACGCGaaaag c 588 gaaACGCGccaaa w 266 ATAACCAGCAAA w 383 cagACGCGagaac w 478 GGAGCCAGCGCG w401 tatCGCGAAAattX.6C 337 AGAGCCAGCAAG C 417 TCGGCCAGCAAT c 501 acaACGCGaaaaa w 370 gcgACGCGaaaaa w 447 AGAGCCAGCAAGX.7C 388 GGAACCAGCAGA w 396 GGAACCAGCAGANumberSCBc 103 gacCACGAAAttt c 105 atgCACGAAAaag c 106 ctaCACGAAAcac c 108 tacCACGAAAgta c 110 ccaCACGAAAaga c 123 agaCACGAAAtgt c 127 acaCACGAAAacg c 181 cagCACGAAAtgg ...SCB.1c178 tgaCACGAAAaac c232 gaaCACGAAAtgc c539 gtaCACGAAAttc w269 agcCACGAAAtgc w347 tgaCACGAAAtgt w541 agtCACGAAAcgc w601 tgtCACGAAAagtSCB.2c330 aacCACGAAAaaa c582 agtCACGAAAcgc w467 attCACGAAAtaaSCB.3w435 atcCACGAAAatcX.8w252 aacCACGAAAagtNumber.1SCB_dc 156 gatCGCGAAAttt c 184 cgaCGCGAAAatg c 218 cagCGCGAAAagt c 222 tatCGCGAAAaaa c 229 tgaCGCGAAAcgc c 237 tatCGCGAAAcga c 238 atcCGCGAAAgga c 283 aagCGCGAAAcaa ....SCB_d.1c 126 tttCGCGAAActg c 415 tttCGCGAAAtct c 566 ttcCGCGAAAaaa c 592 aggCGCGAAAtac c 633 aaaCGCGAAAtgt c242 gaaCGCGAAActt c297 ctcCGCGAAAaat c306 tcgCGCGAAAaga ...SCB_d.2c468 ccaCGCGAAAaga c508 tttCGCGAAAtctSCB_d.3c502 caaCGCGAAAaatNumber.2MCBw 126 gcaACGCGTcgc w 187 caaACGCGTaca w 207 ctcACGCGTcgg w 209 attACGCGTtta w 226 cagACGCGTtgc w 228 acaACGCGTctt w 23 acaACGCGTgct w 267 cccACGCGTagg ...MCB.1w111 gaaACGCGTtct w124 ttgACGCGTttc w128 gtgACGCGTtat w130 agaACGCGTtct w131 gcgACGCGTaac w138 aagACGCGTgaa w139 attACGCGTtta w153 ctaACGCGTttt ...MCB.2w374 taaACGCGTcatMCB.3w309 aggACGCGTaaaNumber.3MCB_dc 106 attACGCGaaaat c 109 acaACGCGactgg c 112 aaaACGCGagaaa c 115 agtACGCGaaagg c 117 gtcACGCGaaaaa c 121 ggaACGCGacgc c 127 gtgACGCGaaaaa c 129 acaACGCGcccga ...MCB_d.1c 123 acaACGCGaacac c 136 aatACGCGattgg c 147 gcaACGCGagaga c 158 tctACGCGcgaag c 163 ctgACGCGcgaaa c 176 gcgACGCGgttgt c 187 agtACGCGatttg c 189 gaaACGCGggcac ...MCB_d.2c 112 ttaACGCGatcga c 220 tagACGCGcctta c 294 ttcACGCGcttaa c 382 gttACGCGaagtc c 477 gcaACGCGcctgg c 501 acaACGCGaaaaa c 549 attACGCGcacg c 557 tgtACGCGcgaac ...MCB_d.3c 617 gaaACGCGcagta w 50 gtaACGCGcttttX.9c 359 acgACGCGccttcNumber.4SFFAATAGATGACCCGATTTGGAAAAAGGTAAACAACAATG ATTTGATTGCCGAAAGAGGCAAAAC GTAAATAGGTTGT CAAAACAAACCCAATAAAGAAAATCCAAAATATAGAAC GTACTTTAACCTGTTTAGGAAAAAG GTAAACAATAACA TCGAACAATTCTAAAAAGGTAAAT AAAAACAATGGTA ...Number.51 2 3 4 ATATAGCGACCGAATCAGGAAAAGGTCAACAACGAAGSwi5C 102 CGAGCCAGCATT C 156 TCTGCCAGCCAA C 200 CAAACCAGCATC C 252 AAGACCAGCATG C 253 AAAGCCAGCCAT C 256 TATGCCAGCCAA C 276 AAGGCCAGCCTC C 293 TTGACCAGCTAA ...Swi5.1C 125 GCAACCAGCTCT C 146 CAAGCCAGCCAT C 195 CGCACCAGCAAC C 245 TAAACCAGCGCA C 301 AGTGCCAGCAAA C 306 GGAGCCAGCGCG C 307 AAGACCAGCATT C 402 TATGCCAGCAAA ...Swi5.2C 212 TATACCAGCGTT C 337 AGAGCCAGCAAG c 19 AGAACCAGCTGA c 320 ACCACCAGCTTA c 545 ACCACCAGCGTA c 569 TTCACCAGCGGC c 642 GAGACCAGCGGA c 651 ATCACCAGCAAA ...Swi5.3C 388 GGAACCAGCAGA C 417 TCGGCCAGCAAT c 336 TTTACCAGCTCA c 363 TGCACCAGCATT c 494 CTGGCCAGCAAG w 396 GGAACCAGCAGANumber.6Swi5ec 102 CGAGCCAGCATT c 137 TAGGCCAGCAAA c 155 ACAACCAGCAGT c 156 CTAACCAGCAAG c 16 AGAGCCAGCAGA c 174 TAAACCAGCATT c 184 ATGGCCAGCATA c 200 CAAACCAGCATC ...Swi5e.1c 222 TTGACCAGCGCC c 256 TAAACCAGCAAA c 306 GGAGCCAGCGCG c 307 AAGACCAGCATT c 637 GGAGCCAGCGAT w 265 TAAACCAGCAAT w 266 ATAACCAGCAAA w 467 TGAGCCAGCAAT w 478 GGAGCCAGCGCG w 536 GAAACCAGCAAC w 554 ATGGCCAGCACCSwi5e.2c 337 AGAGCCAGCAAG c 417 TCGGCCAGCAAT c 642 GAGACCAGCGGA w 447 AGAGCCAGCAAGSwi5e.3c 388 GGAACCAGCAGA w 396 GGAACCAGCAGANumber.7ECBc 185 TTACCCATTTAGGAAA c 221 TTACCCAATTAGGAAA c 251 TTTCCCTTTAAGGAAA c 258 TTTCCCAAAAAGGAAA c 387 TTTCCCTTTTAGGAAA c 394 TTACCCACTTAGGAAA w 154 TTTCCCTTTTAGGAAA w 177 TTACCCACTTAGGAAA w 229 TTACCCAGAAAGGAAA w 378 TTTCCCTAATAGGAAA w 453 TTTCCCGTTTAGGAAA w 595 TTTCCCACTAAGGAAANumber.8STE12c 243 CCTTTTTCAGTTTCTATTTTTAACACTGAAACT w 112 CCCTATTTGGTTGCAATTCAATTCCGTGAAACC w 119 CCCAATGTAGAAAAGTACATCATATGAAACA w 218 CCTAATTGGGTAAGTACATGATGAAACA w 224 CCCAAAAAGGAAATTTACATGTTAAATGAAACC ...MIG1.sitesc 114 AATAGACTGGGG c 137 TCTATCCTGGGG c 147 TGAATGCTGGGG c 165 AATAAAGTGGGG c 215 TATAATGCGGGG c 304 AAATCGCCGGGG c 332 AAATATCTGGGG c 368 AATTGCGCGGGG ...X.10c 161 AGTTTGGTGGGG c 262 AAGATGGTGGGG c 498 AAAAAACCGGGG c 499 AAAAATGCGGGG w 296 TATTCGGCGGGG w 578 CTTTTGCCGGGGX.11taken from the Spellman support web site.
PMID 9843569
data(spYCCmeta) spYCCmeta[1:5,1:6]