# Minimal Data Library for RFlowCyt examples

## Documentation for package ‘rfcdmin’ version 1.6.5

## Help Pages

bccrc | Flow Cytometry Standard (FCS) files- British Columbia Cancer Research Center -
best.box.X.ranges | PRIM output from VRCmin data analysis
box.idx.list | PRIM output from VRCmin data analysis
box.idx.listTD1 | PRIM output from VRCmin data analysis
box.idx.listTD2 | PRIM output from VRCmin data analysis
box.support.ES | PRIM output from VRCmin data analysis
box.support.PS | PRIM output from VRCmin data analysis
facscan256.fcs | Flow Cytometry Standard (FCS) file version 2.0, University of Washington, Seattle, WA
facscan256.FCSRobj | Archived FCS R OBJECTS corresponding to the binary FCS files
facscan256.FCSRobj.current | Script using current version of 'rflowcyt' package to read in FCS R OBJECTS corresponding to the binary FCS files
FCSRobj.currentmin | Script using current version of 'rflowcyt' package to read in FCS R OBJECTS corresponding to the binary FCS files
FCSRobjmin | Archived FCS R OBJECTS corresponding to the binary FCS files
flowcyt.data | Archived Flow Cytometry FCS objects - British Columbia Cancer Research Center -
flowcyt.fcs | Flow Cytometry Standard (FCS) files- British Columbia Cancer Research Center -
flowcyt.fluors | Archived Flow Cytometry Fluorescence Measurements - British Columbia Cancer Research Center -
hivneg.gag | Vaccine Research Center (VRC), NIH, Bethesda, MD data-Percentage Positives
hivneg.pola | Vaccine Research Center (VRC), NIH, Bethesda, MD data-Percentage Positives
hivneg.polb | Vaccine Research Center (VRC), NIH, Bethesda, MD data-Percentage Positives
hivpos.gag | Vaccine Research Center (VRC), NIH, Bethesda, MD data-Percentage Positives
hivpos.pola | Vaccine Research Center (VRC), NIH, Bethesda, MD data-Percentage Positives
hivpos.polb | Vaccine Research Center (VRC), NIH, Bethesda, MD data-Percentage Positives
MC.053 | Archived Flow Cytometry Standard (FCS) R-object -Fred Hutchinson Cancer Research Center
MC.053min | Archived Flow Cytometry Standard (FCS) R-object -Fred Hutchinson Cancer Research Center
means.ES | PRIM output from VRCmin data analysis
means.PS | PRIM output from VRCmin data analysis
out.cv | PRIM output from VRCmin data analysis
out.expand | PRIM output from VRCmin data analysis
out.peel | PRIM output from VRCmin data analysis
PerPosROC | Vaccine Research Center (VRC), NIH, Bethesda, MD data-Percentage Positives
PerPosROCmin | Vaccine Research Center (VRC), NIH, Bethesda, MD data-Percentage Positives
PRIM.example | PRIM example: Simulated clustered data
PRIM.real.data.min | PRIM output from VRCmin data analysis
Rule1.idx | PRIM output from VRCmin data analysis
SEB-NP22.fcs | SEB-NP22.fcs, Flow Cytometry Standard files version 3.0, Fred Hutchinson Cancer Research Center, Seattle, Wa
SEB.NP22.FCSRobj | Archived FCS R OBJECTS corresponding to the binary FCS files
SEB.NP22.FCSRobj.current | Script using current version of 'rflowcyt' package to read in FCS R OBJECTS corresponding to the binary FCS files
st.1829 | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
st.DRT | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
TD1 | PRIM output from VRCmin data analysis
TD2 | PRIM output from VRCmin data analysis
true.Y.status.PRIM | PRIM example: Simulated clustered data
true.Y.status.PRIM4D | PRIM example: Simulated clustered data
type.ES | PRIM output from VRCmin data analysis
type.PS | PRIM output from VRCmin data analysis
unst.1829 | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
unst.DRT | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
VRC | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
VRC.rda.gz | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
VRC.RData | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
VRCmin | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
VRCmin.RData.gz | Archived Flow Cytometry Standard (FCS) R-objects- Vaccine Research Center, NIH
X.PRIM | PRIM example: Simulated clustered data
X.PRIM4D | PRIM example: Simulated clustered data
Y.PRIM | PRIM example: Simulated clustered data
Y.PRIM4D | PRIM example: Simulated clustered data