| GOHyperG {davidTiling} | R Documentation |
This function is adapted from the function of the same name in
GOstats package. Main difference is that it draws the GO
annotations of the genes in candidates from the data.frame
gff. It also draws a plot.
GOHyperG(candidates, gff, plotmain)
candidates |
character vector |
gff |
see getAllGO |
plotmain |
character, plot title |
The elements of x are matched against the column
gene in gff. All are required to match.
A list of GO terms is then extracted from the corresponding
rows in the Ontology_term column. A gene may be annotated by
several terms, separated by ",". Then the GO package is used to
augment this by all ancestor terms.
List of character vectors.
W. Huber <huber@ebi.ac.uk>