# Affymetrix zebrafish annotation data (chip zebrafish)

## Documentation for package ‘zebrafish.db’ version 2.2.5

## Help Pages

zebrafish | Bioconductor annotation data package
zebrafishACCNUM | Map Manufacturer identifiers to GenBank Accession Numbers
zebrafishALIAS2PROBE | Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
zebrafishCHR | Map Manufacturer IDs to Chromosomes
zebrafishCHRLENGTHS | A named vector for the length of each of the chromosomes
zebrafishCHRLOC | Map Manufacturer IDs to Chromosomal Location
zebrafishCHRLOCEND | Map Manufacturer IDs to Chromosomal Location
zebrafishENSEMBL | Map Ensembl gene acession numbers with Entrez Gene identifiers
zebrafishENSEMBL2PROBE | Map Ensembl gene acession numbers with Entrez Gene identifiers
zebrafishENTREZID | Map between Manufacturer Identifiers and Entrez Gene
zebrafishENZYME | Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
zebrafishENZYME2PROBE | Map between Enzyme Commission Numbers and Manufacturer Identifiers
zebrafishGENENAME | Map between Manufacturer IDs and Genes
zebrafishGO | Map between Manufacturer IDs and Gene Ontology (GO)
zebrafishGO2ALLPROBES | Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
zebrafishGO2PROBE | Map between Gene Ontology (GO) and Manufacturer Identifiers
zebrafishLOCUSID | Map between Manufacturer Identifiers and Entrez Gene
zebrafishMAPCOUNTS | Number of mapped keys for the maps in package zebrafish.db
zebrafishORGANISM | The Organism for zebrafish
zebrafishPATH | Mappings between probe identifiers and KEGG pathway identifiers
zebrafishPATH2PROBE | Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
zebrafishPFAM | Map Manufacturer IDs to Pfam IDs
zebrafishPMID | Map between Manufacturer Identifiers and PubMed Identifiers
zebrafishPMID2PROBE | Map between PubMed Identifiers and Manufacturer Identifiers
zebrafishPROSITE | Map Manufacturer IDs to PROSITE ID
zebrafishREFSEQ | Map between Manufacturer Identifiers and RefSeq Identifiers
zebrafishSYMBOL | Map between Manufacturer Identifiers and Gene Symbols
zebrafishUNIGENE | Map between Manufacturer Identifiers and UniGene cluster identifiers
zebrafishUNIPROT | Map Uniprot accession numbers with Entrez Gene identifiers
zebrafishUNIPROT2PROBE | Map Uniprot accession numbers with Entrez Gene identifiers
zebrafishZFIN | Map Zfin accession numbers with Entrez Gene identifiers
zebrafishZFIN2PROBE | Map Zfin accession numbers with Entrez Gene identifiers
zebrafish_dbconn | Collect information about the package annotation DB
zebrafish_dbfile | Collect information about the package annotation DB
zebrafish_dbInfo | Collect information about the package annotation DB
zebrafish_dbschema | Collect information about the package annotation DB