illuminaRatv1BeadIDMAPCOUNTSpackage:illuminaRatv1BeadID.dbR Documentation

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_D_e_s_c_r_i_p_t_i_o_n:

     illuminaRatv1BeadIDMAPCOUNTS provides the "map count" (i.e. the
     count of mapped keys) for each map in package
     illuminaRatv1BeadID.db.

_D_e_t_a_i_l_s:

     This "map count" information is precalculated and stored in the
     package annotation DB. This allows some quality control and is
     used by the 'checkMAPCOUNTS' function defined in AnnotationDbi to
     compare and validate different methods (like 'count.mappedkeys(x)'
     or 'sum(!is.na(as.list(x)))') for getting the "map count" of a
     given map.

_S_e_e _A_l_s_o:

     'mappedkeys', 'count.mappedkeys', 'checkMAPCOUNTS'

_E_x_a_m_p_l_e_s:

       illuminaRatv1BeadIDMAPCOUNTS
       mapnames <- names(illuminaRatv1BeadIDMAPCOUNTS)
       illuminaRatv1BeadIDMAPCOUNTS[mapnames[1]]
       x <- get(mapnames[1])
       sum(!is.na(as.list(x)))
       count.mappedkeys(x)   # much faster!

       ## Check the "map count" of all the maps in package illuminaRatv1BeadID.db
       checkMAPCOUNTS("illuminaRatv1BeadID.db")

