hugene10stMAPCOUNTS {hugene10st.db} | R Documentation

## Number of mapped keys for the maps in package hugene10st.db

### Description

hugene10stMAPCOUNTS provides the "map count" (i.e. the count of mapped keys) for each map in package hugene10st.db.

### Details

This "map count" information is precalculated and stored in the package annotation DB. This allows some quality control and is used by the `checkMAPCOUNTS` function defined in AnnotationDbi to compare and validate different methods (like `count.mappedkeys(x)` or `sum(!is.na(as.list(x)))`) for getting the "map count" of a given map.

### See Also

`mappedkeys`, `count.mappedkeys`, `checkMAPCOUNTS`

### Examples

      hugene10stMAPCOUNTS
      mapnames <- names(hugene10stMAPCOUNTS)
      hugene10stMAPCOUNTS[mapnames[1]]
      x <- get(mapnames[1])
      sum(!is.na(as.list(x)))
      count.mappedkeys(x)   # much faster!

      ## Check the "map count" of all the maps in package hugene10st.db
      checkMAPCOUNTS("hugene10st.db")

[Package hugene10st.db version 1.0.2 Index]