agARACYC {ag.db} | R Documentation

## Mappings between probe identifiers and KEGG pathway identifiers

### Description

AraCyc http://www.arabidopsis.org/tools/aracyc/ maintains pathway data for Arabidopsis thaliana. agARACYC maps probe identifiers to the common names of the pathways in which the genes represented by the probe identifiers are involved. Information is obtained from AraCyc.

### Details

Annotation based on data provided by: Tair ( ftp://ftp.arabidopsis.org/Pathways/aracyc_dump.20080611 ) on 2008-Aug12

### References

http://www.genome.ad.jp/kegg/

### Examples

      x <- agARACYC
      # Get the probe identifiers that are mapped to pathways
      mapped_probes <- mappedkeys(x)
      # Convert to a list
      xx <- as.list(x[mapped_probes])
      if(length(xx) > 0) {
        # Get the pathways for the first five probes
        xx[1:5]
        # For the first probe
        xx[[1]]
      }

[Package ag.db version 2.2.7 Index]