Entry: Q2
Aliases: Q2
Keywords: multivariate
Description: Perform internal cross-validation for PCA
URL: ../../../library/pcaMethods/html/Q2.html

Entry: asExprSet
Aliases: asExprSet
Keywords: multivariate
Description: Convert pcaRes object to an expression set
URL: ../../../library/pcaMethods/html/asExprSet.html

Entry: bpca
Aliases: bpca
Keywords: multivariate
Description: Bayesian PCA Missing Value Estimator
URL: ../../../library/pcaMethods/html/bpca.html

Entry: checkData
Aliases: checkData
Keywords: multivariate
Description: Do some basic checks on a given data matrix
URL: ../../../library/pcaMethods/html/checkData.html

Entry: pcaRes
Aliases: nlpcaNet nlpcaNet-class
Keywords: classes
Description: Class for representing a neural network for computing Non-linear PCA
URL: ../../../library/pcaMethods/html/class.nlpcaNet.html

Entry: nniRes
Aliases: nniRes nniRes-class print,nniRes-method
Keywords: classes
Description: Class for representing a nearest neighbour imputation result
URL: ../../../library/pcaMethods/html/class.nniRes.html

Entry: pcaRes
Aliases: pcaRes pcaRes-class print,pcaRes-method summary,pcaRes-method slplot,pcaRes-method completeObs,pcaRes-method
Keywords: classes
Description: Class for representing a PCA result
URL: ../../../library/pcaMethods/html/class.pcaRes.html

Entry: fitted.pcaRes
Aliases: fitted.pcaRes fitted,pcaRes-method
Keywords: multivariate
Description: Extract fitted values from PCA.
URL: ../../../library/pcaMethods/html/fitted.pcaRes.html

Entry: helix
Aliases: helix
Keywords: datasets
Description: A helix structured toy data set
URL: ../../../library/pcaMethods/html/helix.html

Entry: KEstimate
Aliases: kEstimate
Keywords: multivariate
Description: Estimate best number of Components for missing value estimation
URL: ../../../library/pcaMethods/html/kEstimate.html

Entry: KEstimateFast
Aliases: kEstimateFast
Keywords: multivariate
Description: Estimate best number of Components for missing value estimation
URL: ../../../library/pcaMethods/html/kEstimateFast.html

Entry: llsImpute
Aliases: llsImpute
Keywords: multivariate
Description: LLSimpute algorithm
URL: ../../../library/pcaMethods/html/llsImpute.html

Entry: metaboliteData
Aliases: metaboliteData
Keywords: datasets
Description: An incomplete metabolite data set from an Arabidopsis coldstress experiment
URL: ../../../library/pcaMethods/html/metaboliteData.html

Entry: metaboliteDataComplete
Aliases: metaboliteDataComplete
Keywords: datasets
Description: A complete metabolite data set from an Arabidopsis coldstress experiment
URL: ../../../library/pcaMethods/html/metaboliteDataComplete.html

Entry: nipalsPca
Aliases: nipalsPca
Keywords: multivariate
Description: Perform principal component analysis using the Non-linear iterative partial least squares (NIPALS) algorithm.
URL: ../../../library/pcaMethods/html/nipalsPca.html

Entry: nlpca
Aliases: nlpca
Keywords: multivariate
Description: Non-linear PCA
URL: ../../../library/pcaMethods/html/nlpca.html

Entry: nni
Aliases: nni
Keywords: multivariate
Description: Nearest neighbour imputation
URL: ../../../library/pcaMethods/html/nni.html

Entry: pca
Aliases: pca
Keywords: multivariate
Description: Perform principal component analysis
URL: ../../../library/pcaMethods/html/pca.html

Entry: plotPcs
Aliases: plotPcs
Keywords: multivariate
Description: Plot many side by side scores XOR loadings plots
URL: ../../../library/pcaMethods/html/plotPcs.html

Entry: plotR2
Aliases: plotR2
Keywords: multivariate
Description: R2 plot (screeplot) for PCA
URL: ../../../library/pcaMethods/html/plotR2.html

Entry: ppca
Aliases: ppca
Keywords: multivariate
Description: Probabilistic PCA Missing Value Estimator
URL: ../../../library/pcaMethods/html/ppca.html

Entry: prep
Aliases: prep
Keywords: manip
Description: Preprocess a matrix for PCA
URL: ../../../library/pcaMethods/html/prep.html

Entry: robustPca
Aliases: robustPca
Keywords: multivariate
Description: PCA implementation based on robustSvd
URL: ../../../library/pcaMethods/html/robustPca.html

Entry: robustSvd
Aliases: robustSvd
Keywords: algebra
Description: Alternating L1 Singular Value Decomposition
URL: ../../../library/pcaMethods/html/robustSvd.html

Entry: slplot
Aliases: slplot
Keywords: multivariate
Description: Plot a side by side scores and loadings plot
URL: ../../../library/pcaMethods/html/slplot.html

Entry: svdImpute
Aliases: svdImpute
Keywords: multivariate
Description: SVDimpute algorithm
URL: ../../../library/pcaMethods/html/svdImpute.html

Entry: svdPca
Aliases: svdPca
Keywords: multivariate
Description: Perform principal component analysis using singular value decomposition
URL: ../../../library/pcaMethods/html/svdPca.html
