Entry: colorNodes
Aliases: colorNodes colorNodes,graphNEL,numeric,character,function-method
Keywords: models
Description: attach node coloring information to a graphNEL instance
URL: ../../../library/pathRender/html/colorNodes.html

Entry: coloredGraph-class
Aliases: coloredGraph-class pwayRendAttrs plot,coloredGraph-method
Keywords: classes
Description: Class "coloredGraph"
URL: ../../../library/pathRender/html/coloredGraph-class.html

Entry: graphcMAP
Aliases: graphcMAP
Keywords: models
Description: obtain a graph object corresponding to a cMAP pathway
URL: ../../../library/pathRender/html/graphcMAP.html

Entry: plotExGraph
Aliases: plotExGraph
Keywords: models
Description: plot a gene network, coloring nodes according to relative expression values
URL: ../../../library/pathRender/html/plotExGraph.html

Entry: pwayGraph-class
Aliases: pwayGraph-class plot,pwayGraph-method
Keywords: classes
Description: Class "pwayGraph" -- extension to graphNEL for pathway rendering
URL: ../../../library/pathRender/html/pwayGraph-class.html

Entry: reduceES
Aliases: reduceES
Keywords: models
Description: collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene
URL: ../../../library/pathRender/html/reduceES.html

Entry: rendercMAPPathway
Aliases: rendercMAPPathway
Keywords: graphs
Description: Render pathways from cMAP
URL: ../../../library/pathRender/html/rendercMAP.html
