SnpCallSetPlus-class      package:oligoClasses      R Documentation

_C_l_a_s_s "_S_n_p_C_a_l_l_S_e_t_P_l_u_s"

_D_e_s_c_r_i_p_t_i_o_n:

     Description for Genotyping

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects of this class are unions of Quantification and Calls.

_S_l_o_t_s:


     '_a_s_s_a_y_D_a_t_a': Object of class '"AssayData"'

     '_p_h_e_n_o_D_a_t_a': Object of class '"AnnotatedDataFrame"'

     '_f_e_a_t_u_r_e_D_a_t_a': Object of class '"AnnotatedDataFrame"'

     '_e_x_p_e_r_i_m_e_n_t_D_a_t_a': Object of class '"MIAME"'

     '_a_n_n_o_t_a_t_i_o_n': Object of class '"character"'

     '.___c_l_a_s_s_V_e_r_s_i_o_n__': Object of class '"Versions"'

_E_x_t_e_n_d_s:

     Class '"SnpQSet"', directly. Class '"SnpCnvQSet"', directly. Class
     '"SnpCallSet"', directly. Class '"QuantificationSet"', by class
     "SnpQSet", distance 2. Class 'eSet', by class "SnpQSet", distance
     3. Class 'VersionedBiobase', by class "SnpQSet", distance 4. Class
     'Versioned', by class "SnpQSet", distance 5. Class
     '"QuantificationSet"', by class "SnpCnvQSet", distance 2. Class
     'eSet', by class "SnpCnvQSet", distance 3. Class
     'VersionedBiobase', by class "SnpCnvQSet", distance 4. Class
     'Versioned', by class "SnpCnvQSet", distance 5. Class
     '"SnpLevelSet"', by class "SnpCallSet", distance 2. Class 'eSet',
     by class "SnpCallSet", distance 3. Class 'VersionedBiobase', by
     class "SnpCallSet", distance 4. Class 'Versioned', by class
     "SnpCallSet", distance 5.

_M_e_t_h_o_d_s:


     _c_a_l_c_u_l_a_t_e_C_o_p_y_N_u_m_b_e_r 'signature(object="SnpCallSetPlus")' See
          'calculateCopyNumber'

     _d_b 'signature(object="SnpCallSetPlus")'

_E_x_a_m_p_l_e_s:

     showClass("SnpCallSetPlus")

