fFit                package:occugene                R Documentation

_P_a_r_a_m_e_t_r_i_c _F_i_t _f_o_r _t_h_e _C_u_m_u_l_a_t_i_v_e _O_c_c_u_p_a_n_c_y _D_i_s_t_r_i_b_u_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     Parameterizes the cumulative occupancy distribution.

_U_s_a_g_e:

     fFit(anno,clone,TR=TRUE,b0=0,b1=0,b2=.0)

_A_r_g_u_m_e_n_t_s:

    anno: 2-column matrix of annotation

   clone: vector

      TR: Report a trace

      b0: Starting value b0

      b1: Starting value b1

      b2: Starting value b2

_D_e_t_a_i_l_s:

     Fits various parametric functions to the occupancy distribution
     for  a multinomial. Using the starting values of b0=0, b1=0, and
     b2=0 forces the  function to find starting values for you.

_V_a_l_u_e:

     Returns a object.

_A_u_t_h_o_r(_s):

     Oliver Will owill4@yahoo.com

_R_e_f_e_r_e_n_c_e_s:

     See the book chapter O. Will (**) in **

_E_x_a_m_p_l_e_s:

     data(sampleAnnotation)
     data(sampleInsertions)
     anno <- cbind(sampleAnnotation$first,sampleAnnotation$last)
     clone <- sampleInsertions$position
     TR <- TRUE
     fm <- fFit(anno,clone,TR)

