plotProfiles           package:goProfiles           R Documentation

_P_l_o_t _f_u_n_c_t_i_o_n_a_l _p_r_o_f_i_l_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     Plots basic functional profiles created with the 'basicProfile'
     instruction. If several profiles have to be plot together they
     must be first merged using the 'mergeProfiles' function. The
     labels of the Y-axis of the plots are the descriptions of the GO
     Terms. If the label is longer than 20 characters it is truncated
     and ended by three dots.

_U_s_a_g_e:

     plotProfiles(aProf, aTitle = "Functional Profile", anOnto = NULL, percentage = FALSE, 
     HORIZVERT = TRUE, legendText = NULL, colores = c("white", "red"), multiplePlots = F, multipleWindows = T, labelWidth=25,...)

_A_r_g_u_m_e_n_t_s:

   aProf: Functional profile to plot

  aTitle: Title for the figures

  anOnto: Ontology (to appear in the title)

percentage: Plot absolute or relative frequencies (not summing to 100)

HORIZVERT: Plot horizontal or vertical bars

legendText: Text of the legend for the plot

 colores: Colors to be used

multiplePlots: Plot all profiles for a given dataset in one figure

multipleWindows: Open a new window after each plot

labelWidth: Width of Y axis labels (Names of GO categories) in the plot

     ...: Other graphical parameters that should be passed for plotting

_V_a_l_u_e:

     The plot

_A_u_t_h_o_r(_s):

     Alex Sanchez

_E_x_a_m_p_l_e_s:

     data(sampleProfiles)
     plotProfiles(basicWelsh01[['MF']],'Functional profiles for Welsh dataset',percentage=TRUE)
     merged<-mergeProfilesLists (basicSingh01, basicWelsh01, profNames=c('Welsh','Singh'))
     plotProfiles(merged, percentage=TRUE, multiplePlots=TRUE, labelWidth=30)

