/******************************************************************************
*                                                                             *
*      cosmo - Constrained search for motifs in DNA sequences                 *
*      Authors: Oliver Bembom, Fabian Gallusser, and Sandrine Dudoit          *
*                                                                             *
*      Conditions of use:                                                     *
*                                                                             *
*    1. cosmo is under the exclusive copyright of Oliver Bembom,              *
*       (bembom@berkeley.edu), the Regents of the University of California,   *
*       and Peter Spellucci (spellucci@mathematik.tu-darmstadt.de).           *
*                                                                             *
*    2. Permission to use, copy, modify, and distribute any part of this      *
*       software for research purposes, without fee and without a written     *
*       agreement, is hereby granted, provided that this license appears in   *
*       all copies. Commercial uses require permission and licensing from     *
*       Oliver Bembom, the Regents of the University of California, and       *
*       Peter Spellucci.                                                      *
*                                                                             *
*    3. If you use this software in your research, please cite                *
*                                                                             *
*       O. Bembom, S. Keles, M.J. van der Laan (2007). Supervised Detection   *
*       of Conserved Motifs in DNA Sequences with cosmo. Statistical          *
*       Applications in Genetics and Molecular Biology: Vol. 6 : Iss. 1,      *
*       Article 8. http://www.bepress.com/sagmb/vol6/iss1/art8.               *
*                                                                             *
*       cosmo makes use of the donlp2() function by Peter Spellucci.          *
*       The use of donlp2() must be acknowledged in any publication which     *
*       contains results obtained with cosmo or parts of it. Citation of the  *
*       author's name and netlib-source is suitable.                          *
*                                                                             *
*    4. In no event shall the authors be liable to any party for direct, in-  *
*       direct, special, incidental, or consequential damages, including lost *
*       profits, arising out of the use of this software, even if the authors *
*       have been advised of the possibility of such damage.                  *
*                                                                             *
*    5. cosmo is provided on an 'as is' basis, and the authors have no obli-  *
*       gations to provide maintenance, support, updates, enhancements, or    *
*       modifications. The authors make no representations and extends no     *
*       warranties of any kind, either expressed or implied, including, but   *
*       not limited to, the implied warranties of merchantability or fitness  *
*       for a particular purpose, or that the use of the material will not    *
*       infringe any patent, trademark or other rights.                       *
*                                                                             *
*                                                                             *
******************************************************************************/
