plotGoldenGate4OPA       package:beadarraySNP       R Documentation

_P_l_o_t _G_o_l_d_e_n _G_a_t_e _g_e_n_o_m_i_c _v_i_e_w

_D_e_s_c_r_i_p_t_i_o_n:

     Plots a full genome view based on 4 subsamples of Illumina Golden
     Gate data

_U_s_a_g_e:

     plotGoldenGate4OPA(object, cn.sum = NULL, sample = 1, plotRaw = FALSE, main = NULL, interact = FALSE, ...)
     plotGenomePanels(object, cn.sum = NULL, sample = 1, plotRaw = FALSE, main = NULL, interact = FALSE, panels = list(p1 = c(1, 2, 3, 22), p2 = c(5, 6, 7, 8, 9), p3 = c(10, 11, 12, 13, 14, 15, 21), p4 = c(4, 16, 17, 18, 19, 20, 98, 99)), ...)

_A_r_g_u_m_e_n_t_s:

  object: class 'SnpSetIllumina'

  cn.sum: list containing genomic states, see 'createCNSummary' 

  sample: identifier to select the sample within the object

 plotRaw: logical, plot raw data points

    main: character, Title of plot

interact: logical, plot should be usable for interactive copy number
          determination 'interactiveCNselect'

  panels: list, vectors of chromosomes for each panel

     ...: extra arguments are formwarded to 'plot'

_D_e_t_a_i_l_s:

     prepare interactive selection

_V_a_l_u_e:

     list, see 'createCNSummary'

_A_u_t_h_o_r(_s):

     Jan Oosting

_S_e_e _A_l_s_o:

     'segmentate, alterCN, interactiveCNselect createCNSummary'

