BeadstudioQC          package:beadarraySNP          R Documentation

_Q_u_a_l_i_t_y _c_o_n_t_r_o_l _o_f _B_e_a_d_s_t_u_d_i_o _r_e_p_o_r_t _f_i_l_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     When data has been imported using a Beadstudio samplesheet and
     reportfile, these functions can be used to generate quality
     measures

_U_s_a_g_e:

     BeadstudioQC(object, QClist = list(), arrayType = "Sentrix96")
     pdfBeadstudioQC(QClist, basename = "beadstudio", by = 10)

_A_r_g_u_m_e_n_t_s:

  object: 'SnpSetIllumina' object.

  QClist: list, result of previous call to 'BeadstudioQC'

arrayType: character, type of array

basename: character, prefix for PDF files. This name will be added
          before the Barcode of the chip

      by: integer, number of samples in barplot, see
          'reportSamplePanelQC'

_V_a_l_u_e:

     The 'BeadstudioQC' function generates a list of 'QCIllumina'
     objects The 'pdfBeadstudioQC' function generates a pdf-file for
     each 'QCIllumina' object in the list

_A_u_t_h_o_r(_s):

     J. Oosting

_S_e_e _A_l_s_o:

     'pdfQC','calculateQCarray'

