alphabetScore           package:ShortRead           R Documentation

_E_f_f_i_c_i_e_n_t_l_y _c_a_l_c_u_l_a_t_e _t_h_e _s_u_m _o_f _q_u_a_l_i_t_y _s_c_o_a_r_e_s _a_c_r_o_s_s _b_a_s_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This generic takes a 'QualityScore' object and calculates, for
     each read, the sum of the encoded nucleotide probabilities.

_U_s_a_g_e:

     alphabetScore(object, ...)

_A_r_g_u_m_e_n_t_s:

  object: An object of class 'QualityScore'.

     ...: Additional arguments, currently unused.

_V_a_l_u_e:

     A vector of numeric values of length equal to the length of
     'object'.

_A_u_t_h_o_r(_s):

     Martin Morgan <mtmorgan@fhcrc.org>

