AlignedDataFrame-class       package:ShortRead       R Documentation

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_D_e_s_c_r_i_p_t_i_o_n:

     This class extends 'AnnotatedDataFrame'. It is a data frame and
     associated metadata (describing the columns of the data frame).
     The main purpose of this class is to contain alignment data in
     addition to the central information of 'AlignedRead'.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects from the class are created by calls to the
     'AlignedDataFrame' function.

_S_l_o_t_s:



     '_d_a_t_a': Object of class '"data.frame"' containing the data. See
          'AnnotatedDataFrame' for details.

     '_v_a_r_M_e_t_a_d_a_t_a': Object of class '"data.frame"' describing columns
          of 'data'.  See 'AnnotatedDataFrame' for details.

     '_d_i_m_L_a_b_e_l_s': Object of class 'character' describing the dimensions
          of the AnnotatedDataFrame. Used internally; see
          'AnnotatedDataFrame' for details.

     '.___c_l_a_s_s_V_e_r_s_i_o_n__': Object of class '"Versions"' describing the
          version of this object. Used internally; see
          'AnnotatedDataFrame' for details.


_E_x_t_e_n_d_s:

     Class '"AnnotatedDataFrame"', directly. Class '"Versioned"', by
     class "AnnotatedDataFrame", distance 2.

_M_e_t_h_o_d_s:

     This class inherits methods 'pData' (to retrieve the underlying
     data frame) and 'varMetadata' (to retrieve the metadata) from
     'AnnotatedDataFrame'.

_A_u_t_h_o_r(_s):

     Martin Morgan <mtmorgan@fhcrc.org>

_S_e_e _A_l_s_o:

     'AnnotatedDataFrame'

