SIM-package	SIM-package
A4	A4
acgh.data	acgh.data
acgh.heatmap.with.heatmap	acgh.heatmap.with.heatmap
adj.bhfdr	adj.bhfdr
adj.byfdr	adj.byfdr
assemble.data	assemble.data
chrom.table	chrom.table
collapse.arms	collapse.arms
collapse.bands	collapse.bands
create.color.vector	create.color.vector
expr.data	expr.data
get.abs.start	get.abs.start
get.indep.zscores	get.indep.zscores
get.pvals	get.pvals
get.start.input.regions	get.start.input.regions
heatmap.with.clac.plot	heatmap.with.clac.plot
heatmap.with.plot	heatmap.with.plot
impute.nas.by.surrounding	impute.nas.by.surrounding
integrated.analysis	integrated.analysis
link.metadata	link.metadata
make.Normal.data	make.Normal.data
quantsmooth.heatmap	quantsmooth.heatmap
RESOURCERER.annotation.to.ID	RESOURCERER.annotation.to.ID
run.ia	run.ia
samples	samples
SIM	SIM-package
sim.plot.adj.pvals	sim.plot.adj.pvals
sim.plot.pvals.on.genome	sim.plot.pvals.on.genome
sim.plot.pvals.on.region	sim.plot.pvals.on.region
sim.plot.zscore.heatmap	sim.plot.zscore.heatmap
sim.update.chrom.table	sim.update.chrom.table
tabulate.pvals	tabulate.pvals
tabulate.top.dep.features	tabulate.top.dep.features
tabulate.top.indep.features	tabulate.top.indep.features
writeln	writeln
