BIOGRID.PSIMI25         Supported PSI-MI 2.5 XML data sources
availableXrefs          Get cross reference(s) of interactors from
                        PSI-MI 2.5 files
availableXrefs-methods
                        Methods for function availableXrefs
bait                    Extract bait, prey, participant, inhibitor,
                        pubmed, confidence value, interaction type, or
                        neutral component information from an object of
                        psimi25Interaction-class
complexName             Accessor functions for complex
complexes               Extract complexes from psimi25ComplexEntry
eListHandler            xmlEventParse handlers for PSI-MI XML documents
getAbstractByPMID       A function to obtain the abstract information
                        via a Pubmed ID
interactionType         Type of the interaction
interactions            List interactions in the given
                        psimi25InteractionEntry object
interactorInfo          Interactor info in a matrix
interactorInfo-methods
                        Methods for Function interactorInfo in Package
                        'RpsiXML'
interactors             Interactors of the given object
interactors-methods     Methods for Function interactors
list2Matrix             Converts list into matrix
null2na                 Turns null or NA into character "NA"
organismName            Organism name of the psimi25InteractionEntry
parseComplex            Parse complex, interactor and experiment from
                        PSI-MI 2.5 XML node
parsePsimi25Interaction
                        Parsing PSI-MI 2.5 XML documents into
                        interactions
psimi25Complex-class    Class "psimi25Complex"
psimi25ComplexEntry-class
                        Class "psimi25ComplexEntry"
psimi25Experiment-class
                        Class "psimi25Experiment"
psimi25Graph-class      Class "psimi25Graph" ~~~
psimi25Hypergraph-class
                        Class "psimi25Hypergraph"
psimi25Interaction-class
                        Class "psimi25Interaction"
psimi25InteractionEntry-class
                        Class "psimi25InteractionEntry"
psimi25Interactor-class
                        A class representing interactor from PSI-MI 2.5
                        XML files
psimi25Source-class     Class "psimi25Source"
psimi25XML2Graph        Convert a vector of PSI-MI 2.5 XML files into
                        graph objects
releaseDate             Release date of the psimi25InteractionEntry
                        object
separateXMLDataByExpt   Convert a vector of PSI-MI 2.5 XML files into
                        graph objects based on pubmedID
sourceDb                Extracts the source database of the given
                        parameter
sourceDb-methods        Get source database name
sourceId                Extracts the source database ID of the given
                        paramter
sourceId-methods        Extracting ID in the source database
taxId                   The taxonomy ID of the given parameter
taxId-methods           Methods for function taxId
translateID             Finds identifiers of a given object
translateID-methods     Translate interactors into other identifiers
uniprot                 The UniProt Identifier in the PSI-MI 2.5 XML
                        file
uniprot-methods         Methods for Function uniprot in Package
                        'RpsiXML'
validatePSIMI25         Validating PSI-MI 2.5 file with MIF25 XML
                        schema
