Entry: acore
Aliases: acore
Keywords: utilities
Description: Extraction of alpha cores for soft clusters
URL: ../../../library/Mfuzz/html/acore.html

Entry: cselection
Aliases: cselection
Keywords: cluster
Description: Repeated soft clustering for detection of empty clusters
URL: ../../../library/Mfuzz/html/cselection.html

Entry: fill.NA
Aliases: fill.NA
Keywords: utilities
Description: Replacement of missing values
URL: ../../../library/Mfuzz/html/fill.NA.html

Entry: filter.NA
Aliases: filter.NA
Keywords: utilities
Description: Filtering of genes based on number of non-available expression values.
URL: ../../../library/Mfuzz/html/filter.NA.html

Entry: filter.std
Aliases: filter.std
Keywords: utilities
Description: Filtering of genes based on their standard deviation.
URL: ../../../library/Mfuzz/html/filter.std.html

Entry: kmeans2
Aliases: kmeans2
Keywords: cluster
Description: K-means clustering for gene expression data
URL: ../../../library/Mfuzz/html/kmeans2.html

Entry: kmeans2.plot
Aliases: kmeans2.plot
Keywords: hplot
Description: Plotting results for k-means clustering
URL: ../../../library/Mfuzz/html/kmeans2.plot.html

Entry: mfuzz
Aliases: mfuzz
Keywords: cluster
Description: Function for soft clustering based on fuzzy c-means.
URL: ../../../library/Mfuzz/html/mfuzz.html

Entry: mfuzz.plot
Aliases: mfuzz.plot
Keywords: hplot
Description: Plotting results for soft clustering
URL: ../../../library/Mfuzz/html/mfuzz.plot.html

Entry: mfuzz.plot2
Aliases: mfuzz.plot2
Keywords: hplot
Description: Plotting results for soft clustering with additional options
URL: ../../../library/Mfuzz/html/mfuzz.plot2.html

Entry: mfuzzColorBar
Aliases: mfuzzColorBar
Keywords: utilities
Description: Plots a colour bar
URL: ../../../library/Mfuzz/html/mfuzzColorBar.html

Entry: overlap
Aliases: overlap
Keywords: cluster
Description: Calculation of the overlap of soft clusters
URL: ../../../library/Mfuzz/html/overlap.html

Entry: overlap.plot
Aliases: overlap.plot
Keywords: hplot
Description: Visualisation of cluster overlap and global clustering structure
URL: ../../../library/Mfuzz/html/overlap.plot.html

Entry: partcoef
Aliases: partcoef
Keywords: cluster
Description: Calculation of the partition coefficient matrix for soft clustering
URL: ../../../library/Mfuzz/html/partcoef.html

Entry: randomise
Aliases: randomise
Keywords: utilities
Description: Randomisation of data
URL: ../../../library/Mfuzz/html/randomise.html

Entry: standardise
Aliases: standardise
Keywords: utilities
Description: Standardization of microarray data for clustering.
URL: ../../../library/Mfuzz/html/standardise.html

Entry: standardise2
Aliases: standardise2
Keywords: utilities
Description: Standardization in regards to selected time-point
URL: ../../../library/Mfuzz/html/standardise2.html

Entry: top.count
Aliases: top.count
Keywords: cluster
Description: Determines the number for which each gene has highest membership value in all cluster
URL: ../../../library/Mfuzz/html/top.count.html

Entry: yeast
Aliases: yeast
Keywords: datasets
Description: Gene expression data of the yeast cell cycle
URL: ../../../library/Mfuzz/html/yeast.html
