plotChip-methods            package:HELP            R Documentation

_P_l_o_t _c_h_i_p _i_m_a_g_e (_m_e_t_h_o_d_s)

_D_e_s_c_r_i_p_t_i_o_n:

     Methods for graphic display of spatially-linked data, particularly
     applicable for microarrays

_M_e_t_h_o_d_s:



     _x = "_m_i_s_s_i_n_g", _y = "_m_i_s_s_i_n_g", _z = "_m_i_s_s_i_n_g" Handle empty function
          call 

     _x = "_m_a_t_r_i_x", _y = "_m_i_s_s_i_n_g", _z = "_m_i_s_s_i_n_g" Handle matrix input,
          extract information, and reinterpret function call with
          appropriate vectors 

     _x = "_E_x_p_r_e_s_s_i_o_n_S_e_t", _y = "_m_i_s_s_i_n_g", _z = "_m_i_s_s_i_n_g" Handle input of
          an object of class 'ExpressionSet'. Derive both data and
          position information from a single object. 

     _x = "_E_x_p_r_e_s_s_i_o_n_S_e_t", _y = "_v_e_c_t_o_r", _z = "_m_i_s_s_i_n_g" Handle input of
          an object of class 'ExpressionSet'. Derive position
          information from this object, but the corresponding data from
          vector input. 

     _x = "_E_x_p_r_e_s_s_i_o_n_S_e_t", _y = "_E_x_p_r_e_s_s_i_o_n_S_e_t", _z = "_m_i_s_s_i_n_g" Handle
          input of two objects of class 'ExpressionSet'. Derive
          position information and data from each one, respectively. 

     _x = "_v_e_c_t_o_r", _y = "_v_e_c_t_o_r", _z = "_E_x_p_r_e_s_s_i_o_n_S_e_t" Handle input of an
          object of class 'ExpressionSet'. Derive data from this
          object, but the corresponding position information from
          vector input. 

     _x = "_v_e_c_t_o_r", _y = "_v_e_c_t_o_r", _z = "_v_e_c_t_o_r" Handle input of three
          vectors. Derive X and Y positions and data from each one,
          respectively. 

_A_u_t_h_o_r(_s):

     Reid F. Thompson (rthompso@aecom.yu.edu), Mark Reimers
     (mreimers@vcu.edu)

_S_e_e _A_l_s_o:

     'plotChip'

