makeGenomeAxis         package:GenomeGraphs         R Documentation

_C_r_e_a_t_e_s _a_n _o_b_j_e_c_t _o_f _c_l_a_s_s _G_e_n_o_m_e_A_x_i_s

_D_e_s_c_r_i_p_t_i_o_n:

     Creates an object of class GenomeAxis, representing a genome
     coordinate axis.

_U_s_a_g_e:

     makeGenomeAxis(add53 = FALSE, add35 = FALSE, littleTicks = FALSE, dp = NULL)

_A_r_g_u_m_e_n_t_s:

   add53: Add a 5 to 3 prime label

   add35: Add a 3 to 5 prime label

littleTicks: Add smaller ticks between larger ticks

      dp: Set the display parameters see DisplayPars

_V_a_l_u_e:

     Object of class GenomeAxis

_A_u_t_h_o_r(_s):

     Jim Bullard and Steffen Durinck

_R_e_f_e_r_e_n_c_e_s:

     ~put references to the literature/web site here ~

_S_e_e _A_l_s_o:

     'DisplayPars','gdPlot'

_E_x_a_m_p_l_e_s:

     ##---- Should be DIRECTLY executable !! ----
     ##-- ==>  Define data, use random,
     ##--    or do  help(data=index)  for the standard data sets.

     ## The function is currently defined as
     function (add53 = FALSE, add35 = FALSE, littleTicks = FALSE, 
         dp = NULL) 
     {
         if (is.null(dp)) 
             dp <- getClass("GenomeAxis")@prototype@dp
         new("GenomeAxis", add53 = add53, add35 = add35, dp = dp)
       }

