makeGeneModel          package:GenomeGraphs          R Documentation

_C_r_e_a_t_e_s _a_n _o_b_j_e_c_t _o_f _c_l_a_s_s _G_e_n_e_M_o_d_e_l

_D_e_s_c_r_i_p_t_i_o_n:

     Creates an object of class GeneModel representing a custom
     annotation or gene model

_U_s_a_g_e:

     makeGeneModel(start, end, chromosome, dp = NULL)

_A_r_g_u_m_e_n_t_s:

   start: Vector of start positions for exons

     end: Vector of end positions for exons

chromosome: chromosome name

      dp: Display parametes represented as an object of class
          DisplayPars

_V_a_l_u_e:

     Object of class GeneModel

_A_u_t_h_o_r(_s):

     Steffen Durinck and Jim Bullard

_R_e_f_e_r_e_n_c_e_s:

     ~put references to the literature/web site here ~

_S_e_e _A_l_s_o:

     'DisplayPars'

_E_x_a_m_p_l_e_s:

     ##---- Should be DIRECTLY executable !! ----
     ##-- ==>  Define data, use random,
     ##--    or do  help(data=index)  for the standard data sets.

     ## The function is currently defined as
     function (start, end, chromosome, dp = NULL) 
     {
         if (is.null(dp)) 
             dp <- getClass("GeneModel")@prototype@dp
         new("GeneModel", exonStart = start, exonEnd = end, dp = dp)
       }

