gseModel-class          package:BioMVCClass          R Documentation

_C_l_a_s_s "_g_s_e_M_o_d_e_l": _A _c_l_a_s_s _t_o _r_e_p_r_e_s_e_n_t _a _G_S_E _m_o_d_e_l

_D_e_s_c_r_i_p_t_i_o_n:

     gseModel is a class to represent a gene set enrichment (GSE)
     model.  This class inherits from the virtual class, gModel.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("gseModel",
     ...)'. The initialize method for this class will be created in
     other packages that use this package (for example, the initialize
     method will be created in the iSNetwork package).

_S_l_o_t_s:


     '_m_o_d_e_l_D_a_t_a': the model data, which is an object of GSE 

     '_l_i_n_k_D_a_t_a': a list of functions that link this model to its parent
          and child models (if it has any) 

     '_v_i_r_t_u_a_l_D_a_t_a': the data that is needed by the views of this object 

     '_m_o_d_e_l_N_a_m_e': the name of this model 

     '_m_o_d_e_l_V_a_r': a list of variables that refer to the modelData (for
          instance this may be t-test values that were calculated from
          the modelData) 

_E_x_t_e_n_d_s:

     Class '"gModel"', directly.

_M_e_t_h_o_d_s:

     No methods defined with class "gseModel" in the signature.  The
     methods for this class will be created in other packages that use
     this package like iSNetwork.

_A_u_t_h_o_r(_s):

     Elizabeth Whalen

_S_e_e _A_l_s_o:

     'GSE-class', 'graphModel-class', 'exprModel-class'

