preProcess3prime         package:ArrayTools         R Documentation

_A _w_r_a_p_p_e_r _f_u_n_c_t_i_o_n _t_o _n_o_r_m_a_l_i_z_e _t_h_e _t_h_e _3 _p_r_i_m_e _a_r_r_a_y

_D_e_s_c_r_i_p_t_i_o_n:

     A wrapper function to normalize the 3 prime array by using either
     RMA or GCRMA method

_U_s_a_g_e:

     preProcess3prime(object, method = c("rma", "gcrma"), output = FALSE, mydir = getwd())

_A_r_g_u_m_e_n_t_s:

  object: an 'AffyBatch'.

  method: either 'rma' or 'gcrma' 

  output: If 'output = TRUE', it will output the preprocessed data in
          the specified direcotry  from the 'mydir' argument

   mydir: specifed directory to contain the output

_V_a_l_u_e:

     an 'ExpressionSet'

_A_u_t_h_o_r(_s):

     Xiwei Wu, Arthur Li

_S_e_e _A_l_s_o:

     ~~objects to See Also as 'help', ~~~

_E_x_a_m_p_l_e_s:

     if (require(affydata)) {
         data(Dilution)
         eset <- preProcess3prime(Dilution)
     }

