createIngenuityFile        package:ArrayTools        R Documentation

_A _W_r_a_p_p_e_r _F_u_n_c_t_i_o_n _t_o _C_r_e_a_t_e _F_i_l_e_s _f_o_r _I_n_g_e_n_u_i_t_y _A_n_a_l_y_s_i_s

_D_e_s_c_r_i_p_t_i_o_n:

     A Wrapper Function to Create Files for Ingenuity Analysis

_U_s_a_g_e:

     createIngenuityFile(..., mydir = getwd(), eSet, filename = "IngenuityFile")

_A_r_g_u_m_e_n_t_s:

     ...: a list of regressResult class 

   mydir: the directory where you would like to store the file

    eSet: an ExpressionSet

filename: file name

_D_e_t_a_i_l_s:

     This function enable to create the ingenuity upload file based on
     a list of regressResult

_V_a_l_u_e:

     create an Ingenuity upload file

_A_u_t_h_o_r(_s):

     Xiwei Wu, Arthur Li

_R_e_f_e_r_e_n_c_e_s:

     'http://www.ingenuity.com/'

_E_x_a_m_p_l_e_s:

     data(eSetExample)
     design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment")
     contrast<- new("contrastMatrix", design.matrix = design, 
         compare1 = "Treated", compare2 = "Control")
     result<- regress(eSetExample, contrast)
     ## Not run: createIngenuityFile(result, eSet = eSetExample)

