YEAST-class            package:AnnBuilder            R Documentation

_C_l_a_s_s "_Y_E_A_S_T" _a _s_u_b-_c_l_a_s_s _o_f _p_u_b_R_e_p_o _t_o _h_a_n_d_l_e _d_a_t_a _f_r_o_m _f_t_p._y_e_a_s_t_g_e_n_o_m_e._o_r_g

_D_e_s_c_r_i_p_t_i_o_n:

     This class is a sub-class of pubRepo that is implemented
     specifically to parse the data <URL:
     ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity/domains/domains.tab>

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("YEAST", ...)'. A
     constructor (YEAST) is available and should be used to instatiate
     objects of 'YEAST'

_S_l_o_t_s:


     '_s_r_c_U_r_l': Object of class '"character", from class "pubRepo"' a
          character string for the surce url where data will be
          downloaded/processed

     '_p_a_r_s_e_r': Object of class '"character", from class "pubRepo"'  a
          character string for the name of the file containing a
          segment of perl code with instructions on how the source data
          will be processed and output be generated

     '_b_a_s_e_F_i_l_e': Object of class '"character", from class "pubRepo"' a
          character string for the name of the file used to be parsed. 
          The default file name is "domains.tab".  

_E_x_t_e_n_d_s:

     Class '"pubRepo"', directly.

_M_e_t_h_o_d_s:


     _p_a_r_s_e_D_a_t_a 'signature(object = "YEAST")': A method to parse a
          source file using a specified parser

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL:
     ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity/domains/domains.tab>

_S_e_e _A_l_s_o:

     'pubRepo-class'

_E_x_a_m_p_l_e_s:

     ## Not run: 
     ## create YEAST class
     yeast <- YEAST(srcUrl="ftp://ftp.yeastgenome.org/pub/yeast/sequence_similarity/domains/",
                baseFile="domains.tab")
     yeastDomain <- parseData(yeast)
     head(yeastDomain)
     ## End(Not run)

