Entry: allhex
Aliases: allhex
Keywords: models
Description: utility function: get all hexamers in upstream sequence for an ORF
URL: ../../../library/harbChIP/html/allhex.html

Entry: buildUpstreamSeqs2
Aliases: buildUpstreamSeqs2
Keywords: models
Description: workflow component -- build an upstreamSeqs instance from a FASTA read
URL: ../../../library/harbChIP/html/buildUpstreamSeqs2.html

Entry: chkMotif4TF
Aliases: chkMotif4TF chkAllUS
Keywords: models
Description: analyze relationship between motif frequency and binding intensity for selected motif and TF
URL: ../../../library/harbChIP/html/chkMotif4TF.html

Entry: harbChIP
Aliases: harbChIP
Keywords: datasets
Description: Experimental Data Package: harbChIP
URL: ../../../library/harbChIP/html/harbChIP.html

Entry: sceUpstr
Aliases: sceUpstr
Keywords: models
Description: Biostrings representations of S. cerevisiae upstream regions
URL: ../../../library/harbChIP/html/sceUpstream.html

Entry: upstreamSeqs-class
Aliases: upstreamSeqs-class Nmers,numeric,character,upstreamSeqs-method keys,upstreamSeqs-method organism,upstreamSeqs-method seqs,upstreamSeqs-method show,upstreamSeqs-method Nmers getUpstream keys organism seqs
Keywords: classes
Description: Class "upstreamSeqs"
URL: ../../../library/harbChIP/html/upstreamSeqs-class.html
