hmceuB36               package:GGdata               R Documentation

_r_e_p_r_e_s_e_n_t_a_t_i_o_n_s _o_f _H_a_p_M_a_p _s_n_p _d_a_t_a + _e_x_p_r_e_s_s_i_o_n _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     representations of HapMap snp data + expression data

_U_s_a_g_e:

     data(hmceuB36)

_D_e_t_a_i_l_s:

     These instances of class 'smlSet' are created from two basic
     sources.  

     First, the expression data for 90 CEU families in CEPH were
     obtained from SANGER GENEVAR project.

     Second, data on forward non-redundant SNPs in these individuals
     the HapMap build 36 ftp site in march 2008.  Full provenance
     information still to be supplied.

_V_a_l_u_e:

     instances of class 'smlSet'

_A_u_t_h_o_r(_s):

     Vince Carey <stvjc@channing.harvard.edu>

_R_e_f_e_r_e_n_c_e_s:

     Cheung VG., Spielman RS., Ewens KG., Weber TM., Morley M & Burdick
     JT.: Mapping determinants of human gene expression by regional and
     whole genome association. Nature, 437: 1365-1369, 2005

_E_x_a_m_p_l_e_s:

     data(hmceuB36)
     # be patient
     exprs(hmceuB36)[1:4,1:4]
     # following is slow because of byte - allelecode conversion
     # needs work
     snps(hmceuB36, chrnum(2))[1:4,1:4]

