ri16codMAPCOUNTS         package:ri16cod.db         R Documentation

_N_u_m_b_e_r _o_f _m_a_p_p_e_d _k_e_y_s _f_o_r _t_h_e _m_a_p_s _i_n _p_a_c_k_a_g_e _r_i_1_6_c_o_d._d_b

_D_e_s_c_r_i_p_t_i_o_n:

     ri16codMAPCOUNTS provides the "map count" (i.e. the count of
     mapped keys) for each map in package ri16cod.db.

_D_e_t_a_i_l_s:

     This "map count" information is precalculated and stored in the
     package annotation DB. This allows some quality control and is
     used by the 'checkMAPCOUNTS' function defined in AnnotationDbi to
     compare and validate different methods (like 'count.mappedkeys(x)'
     or 'sum(!is.na(as.list(x)))') for getting the "map count" of a
     given map.

_S_e_e _A_l_s_o:

     'mappedkeys', 'count.mappedkeys', 'checkMAPCOUNTS'

_E_x_a_m_p_l_e_s:

       ri16codMAPCOUNTS
       mapnames <- names(ri16codMAPCOUNTS)
       ri16codMAPCOUNTS[mapnames[1]]
       x <- get(mapnames[1])
       sum(!is.na(as.list(x)))
       count.mappedkeys(x)   # much faster!

       ## Check the "map count" of all the maps in package ri16cod.db
       checkMAPCOUNTS("ri16cod.db")

