Map between custom probeset Identifiers and Uniprot similarities and domains information

Description

gahgu95bUNIPROT is an R environment that provides mappings between custom probeset identifiers and Interpro domains of corresponding protein.

Details

Each identifier is mapped to a named vector containing Uniprot information about similarities and domains. An NA is reported if there is no Uniprot information for a given gene.

Each element name of named vector indicates wether corresponding element refers to similarity or domain information from Uniprot.

Mappings were based on data provided by:

GeneCards database - www.genecards.org

Package built Tue Feb 26 00:10:11 2008

References

www.genecards.org

Examples

    # Convert the environment to a list
    xx <- as.list(gahgu95bUNIPROT)
    if(length(xx) > 0){
        # The Uniprot domains or similarities for the first two elements of XX
        xx[1:2]
        # Get the first one
        xx[[1]]
    }