Roberts2005Annotation_dbconnpackage:Roberts2005Annotation.dbR Documentation

_C_o_l_l_e_c_t _i_n_f_o_r_m_a_t_i_o_n _a_b_o_u_t _t_h_e _p_a_c_k_a_g_e _a_n_n_o_t_a_t_i_o_n _D_B

_D_e_s_c_r_i_p_t_i_o_n:

     Some convenience functions for getting a connection object to (or
     collecting information about) the package annotation DB.

_U_s_a_g_e:

       Roberts2005Annotation_dbconn()
       Roberts2005Annotation_dbfile()
       Roberts2005Annotation_dbschema(file="", show.indices=FALSE)
       Roberts2005Annotation_dbInfo()

_A_r_g_u_m_e_n_t_s:

    file: A connection, or a character string naming the file to print
          to (see the 'file' argument of the 'cat' function for the
          details). 

show.indices: The CREATE INDEX statements are not shown by default. Use
          'show.indices=TRUE' to get them. 

_D_e_t_a_i_l_s:

     'Roberts2005Annotation_dbconn' returns a connection object to the
     package annotation DB. IMPORTANT: Don't call 'dbDisconnect' on the
     connection object returned by 'Roberts2005Annotation_dbconn' or
     you will break all the 'AnnDbObj' objects defined in this package!

     'Roberts2005Annotation_dbfile' returns the path (character string)
     to the package annotation DB (this is an SQLite file).

     'Roberts2005Annotation_dbschema' prints the schema definition of
     the package annotation DB.

     'Roberts2005Annotation_dbInfo' prints other information about the
     package annotation DB.

_V_a_l_u_e:

     'Roberts2005Annotation_dbconn': a DBIConnection object
     representing an open connection to the package annotation DB.

     'Roberts2005Annotation_dbfile': a character string with the path
     to the package annotation DB.

     'Roberts2005Annotation_dbschema': none (invisible 'NULL').

     'Roberts2005Annotation_dbInfo': none (invisible 'NULL').

_S_e_e _A_l_s_o:

     'dbGetQuery', 'dbConnect', 'dbconn', 'dbfile', 'dbschema',
     'dbInfo'

_E_x_a_m_p_l_e_s:

       ## Count the number of rows in the "probes" table:
       dbGetQuery(Roberts2005Annotation_dbconn(), "SELECT COUNT(*) FROM probes")

       ## The connection object returned by Roberts2005Annotation_dbconn() was created with:
       dbConnect(SQLite(), dbname=Roberts2005Annotation_dbfile(), cache_size=64000, synchronous=0)

       Roberts2005Annotation_dbschema()

       Roberts2005Annotation_dbInfo()

