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| AMC_CRC_clinical | Data used in the package DeSousa2013 |
| AMC_sample_head | Data used in the package DeSousa2013 |
| buildClassifier | Build a gene expression based classifier |
| cents | Data used in the package DeSousa2013 |
| clu.pred | Data used in the package DeSousa2013 |
| clus | Data used in the package DeSousa2013 |
| clus.f | Data used in the package DeSousa2013 |
| compGapStats | Computing Gap statistics to identify the optimal number of subtypes |
| conClust | Consensus clustering |
| CRCPipeLine | Pipeline function for De Sousa 2013 |
| data4surv | Data used in the package DeSousa2013 |
| DeSousa2013 | Pipeline function for De Sousa 2013 |
| diffGenes | Data used in the package DeSousa2013 |
| diffGenes.f | Data used in the package DeSousa2013 |
| err | Data used in the package DeSousa2013 |
| figClassify | Classifying the AMC samples |
| figGAP | Computing Gap statistics to identify the optimal number of subtypes |
| figKM | Prognosis of the three subtypes in the AMC data set |
| figPAMCV | Build a gene expression based classifier |
| figSilh | Filter colon cancer samples by Silhouette width |
| filterDiffGenes | Select the most predictive genes from differential genes |
| filterSamples | Filter colon cancer samples by Silhouette width |
| findDiffGenes | Search for differential genes between subtypes |
| gapsmat | Data used in the package DeSousa2013 |
| gapsSE | Data used in the package DeSousa2013 |
| gclu.f | Data used in the package DeSousa2013 |
| ge.all | Data used in the package DeSousa2013 |
| geneExpPre | Preprocessing of the AMC-AJCCII-90 microarray data |
| getCentroids | Retrieve centroids of a PAM classifier |
| nam.ord | Data used in the package DeSousa2013 |
| pam.rslt | Data used in the package DeSousa2013 |
| pamClassify | Classifying the AMC samples |
| pbs2unigenes | Generate a mapping file between probesets and unique gene symbols |
| pred | Data used in the package DeSousa2013 |
| progAMC | Prognosis of the three subtypes in the AMC data set |
| sdat | Data used in the package DeSousa2013 |
| sdat.f | Data used in the package DeSousa2013 |
| sdat.sig | Data used in the package DeSousa2013 |
| selPbs | Data used in the package DeSousa2013 |
| selTopVarGenes | Select top variable probesets |
| signature | Data used in the package DeSousa2013 |
| silh | Data used in the package DeSousa2013 |
| surv | Data used in the package DeSousa2013 |
| survstats | Data used in the package DeSousa2013 |
| thresh | Data used in the package DeSousa2013 |
| uniGenes | Data used in the package DeSousa2013 |