Package: exomeCopy
Type: Package
Title: Copy number variant detection from exome sequencing read depth
Version: 1.6.0
Date: 2013-01-25
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples.  The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.
License: GPL (>= 2)
LazyLoad: yes
Imports: stats4, methods
Depends: IRanges, GenomicRanges, Rsamtools
Suggests: Biostrings
biocViews: CopyNumberVariants, Sequencing, HighThroughputSequencing,
        Genetics
Packaged: 2013-04-04 10:58:43 UTC; biocbuild
Built: R 3.0.0; i386-w64-mingw32; 2013-04-04 16:50:49 UTC; windows
Archs: i386, x64
