S3method(ALLEXTID,BP)
S3method(ALLEXTID,CC)
S3method(ALLEXTID,KEGG)
S3method(ALLEXTID,MF)
S3method(EXTID2TERMID,BP)
S3method(EXTID2TERMID,CC)
S3method(EXTID2TERMID,KEGG)
S3method(EXTID2TERMID,MF)
S3method(TERM2NAME,BP)
S3method(TERM2NAME,CC)
S3method(TERM2NAME,KEGG)
S3method(TERM2NAME,MF)
S3method(TERMID2EXTID,BP)
S3method(TERMID2EXTID,CC)
S3method(TERMID2EXTID,KEGG)
S3method(TERMID2EXTID,MF)
export(Gff2GeneTable)
export(buildGOmap)
export(compareCluster)
export(enrichGO)
export(enrichKEGG)
export(groupGO)
export(plot)
exportClasses(compareClusterResult)
exportClasses(groupGOResult)
exportMethods(summary)
importClassesFrom(DOSE,enrichResult)
importClassesFrom(methods,data.frame)
importFrom(DOSE,ALLEXTID)
importFrom(DOSE,EXTID2NAME)
importFrom(DOSE,EXTID2TERMID)
importFrom(DOSE,TERM2NAME)
importFrom(DOSE,TERMID2EXTID)
importFrom(DOSE,enrich.internal)
importFrom(GO.db,GOBPANCESTOR)
importFrom(GO.db,GOBPCHILDREN)
importFrom(GO.db,GOCCANCESTOR)
importFrom(GO.db,GOCCCHILDREN)
importFrom(GO.db,GOMFANCESTOR)
importFrom(GO.db,GOMFCHILDREN)
importFrom(GO.db,GOTERM)
importFrom(KEGG.db,KEGGEXTID2PATHID)
importFrom(KEGG.db,KEGGPATHID2EXTID)
importFrom(KEGG.db,KEGGPATHID2NAME)
importFrom(ggplot2,"%+%")
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_colour_gradient)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(methods,new)
importFrom(methods,show)
importFrom(plyr,.)
importFrom(plyr,ddply)
importFrom(plyr,dlply)
importFrom(plyr,ldply)
importFrom(plyr,llply)
importFrom(plyr,mdply)
importFrom(plyr,rename)
importFrom(stats4,plot)
importFrom(stats4,summary)
importMethodsFrom(AnnotationDbi,Ontology)
importMethodsFrom(AnnotationDbi,Term)
importMethodsFrom(AnnotationDbi,mappedkeys)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(DOSE,"setReadable<-")
importMethodsFrom(DOSE,plot)
importMethodsFrom(DOSE,show)
importMethodsFrom(DOSE,summary)
