TSSi-package	TSSi-package
annotation	get-methods
annotation,TssData-method	get-methods
annotation-TSSi	get-methods
asRangedData	asRangedData-methods
asRangedData-methods	asRangedData-methods
asRangedData-TSSi	asRangedData-methods
assessGradPoisson	normalize-methods
assessPoisson	normalize-methods
counts	get-methods
counts,TssData-method	get-methods
counts-TSSi	get-methods
delta	get-methods
delta,TssResult-method	get-methods
delta-TSSi	get-methods
end,TssData-method	get-methods
end-TSSi	get-methods
expect	get-methods
expect,TssResult-method	get-methods
expect-TSSi	get-methods
fit	get-methods
fit,TssNorm-method	get-methods
fit-TSSi	get-methods
get-methods	get-methods
get-TSSi	get-methods
idenfify-methods	identify-methods
identifyStartSites	identify-methods
identifyStartSites,TssData-method	identify-methods
identifyStartSites-TSSi	identify-methods
names,TssData-method	get-methods
names-TSSi	get-methods
normalizeCounts	normalize-methods
normalizeCounts,TssData-method	normalize-methods
normalizeCounts-methods	normalize-methods
normalizeCounts-TSSi	normalize-methods
parameters	get-methods
parameters,TssData-method	get-methods
parameters-TSSi	get-methods
physcoCounts	physcoCounts-data
physcoCounts-data	physcoCounts-data
physcoCounts-TSSi	physcoCounts-data
plot	plot-methods
plot,TssData,ANY-method	plot-methods
plot,TssData-method	plot-methods
plot,TssNorm,ANY-method	plot-methods
plot,TssNorm-method	plot-methods
plot,TssResult,ANY-method	plot-methods
plot,TssResult-method	plot-methods
plot-methods	plot-methods
plot-TSSi	plot-methods
ratio	get-methods
ratio,TssNorm-method	get-methods
ratio-TSSi	get-methods
reads	get-methods
reads,TssData-method	get-methods
reads-TSSi	get-methods
readsAsRangedData	asRangedData-methods
readsAsRangedData,TssData-method	asRangedData-methods
readsAsRangedData-TSSi	asRangedData-methods
segmentizeCounts	segmentize-methods
segmentizeCounts,integer,integer-method	segmentize-methods
segmentizeCounts-methods	segmentize-methods
segmentizeCounts-TSSi	segmentize-methods
segments	get-methods
segments,TssData-method	get-methods
segments-TSSi	get-methods
segmentsAsRangedData	asRangedData-methods
segmentsAsRangedData,TssData-method	asRangedData-methods
segmentsAsRangedData-TSSi	asRangedData-methods
show,TssData-method	TssData-class
show,TssNorm-method	TssNorm-class
show,TssResult-method	TssResult-class
show-TSSi	TssData-class
start,TssData-method	get-methods
start-TSSi	get-methods
subtract-functions	subtract-functions
subtractExpectation	subtract-functions
subtractExpectation-TSSi	subtract-functions
tss	get-methods
tss,TssResult-method	get-methods
tss-TSSi	get-methods
tssAsRangedData	asRangedData-methods
tssAsRangedData,TssResult-method	asRangedData-methods
tssAsRangedData-TSSi	asRangedData-methods
TssData	TssData-class
TssData-class	TssData-class
TssData-TSSi	TssData-class
TSSi	TSSi-package
TssNorm	TssNorm-class
TssNorm-class	TssNorm-class
TssNorm-TSSi	TssNorm-class
TssResult	TssResult-class
TssResult-class	TssResult-class
TssResult-TSSi	TssResult-class
[,TssData-method	get-methods
[,TssNorm-method	get-methods
[,TssResult-method	get-methods
