base.stacking.thermodynamics	base.stacking.thermodynamics
calcGC	calcGC
calcGC,character-method	calcGC-methods
calcGC,ExpressionSet-method	calcGC-methods
calcGC,missing-method	calcGC-methods
calcGC,NULL-method	calcGC-methods
calcGC-methods	calcGC-methods
calcPrototype	calcPrototype
calcPrototype,ExpressionSet-method	calcPrototype-methods
calcPrototype,matrix-method	calcPrototype-methods
calcPrototype,missing-method	calcPrototype-methods
calcPrototype,vector-method	calcPrototype-methods
calcPrototype-methods	calcPrototype-methods
calcTm	calcTm
calcTm,character-method	calcTm-methods
calcTm,ExpressionSet-method	calcTm-methods
calcTm,missing-method	calcTm-methods
calcTm,NULL-method	calcTm-methods
calcTm-methods	calcTm-methods
combineData	combineData
combineData,ExpressionSet,missing,missing-method	combineData-methods
combineData,ExpressionSet,vector,missing-method	combineData-methods
combineData,matrix,vector,matrix-method	combineData-methods
combineData,matrix,vector,missing-method	combineData-methods
combineData,missing,missing,missing-method	combineData-methods
combineData,vector,missing,missing-method	combineData-methods
combineData,vector,missing,vector-method	combineData-methods
combineData,vector,vector,missing-method	combineData-methods
combineData,vector,vector,vector-method	combineData-methods
combineData-methods	combineData-methods
createWiggle	createWiggle
createWiggle,ExpressionSet,matrix-method	createWiggle-methods
createWiggle,ExpressionSet,missing-method	createWiggle-methods
createWiggle,matrix,matrix-method	createWiggle-methods
createWiggle,missing,missing-method	createWiggle-methods
createWiggle,vector,matrix-method	createWiggle-methods
createWiggle-methods	createWiggle-methods
exprs2	exprs2
exprs2,ExpressionSet-method	exprs2-methods
exprs2,missing-method	exprs2-methods
exprs2-methods	exprs2-methods
exprs2<-	exprs2
exprs2<-,ExpressionSet,matrix-method	exprs2-methods
exprs2<-,ExpressionSet,missing-method	exprs2-methods
fuzzyMatches	fuzzyMatches
fuzzyMatches,missing,missing-method	fuzzyMatches-methods
fuzzyMatches,NULL,vector-method	fuzzyMatches-methods
fuzzyMatches,vector,missing-method	fuzzyMatches-methods
fuzzyMatches,vector,NULL-method	fuzzyMatches-methods
fuzzyMatches,vector,vector-method	fuzzyMatches-methods
fuzzyMatches-methods	fuzzyMatches-methods
getFeatures	getFeatures
getFeatures,AnnotatedDataFrame,missing-method	getFeatures-methods
getFeatures,AnnotatedDataFrame,NULL-method	getFeatures-methods
getFeatures,AnnotatedDataFrame,vector-method	getFeatures-methods
getFeatures,ExpressionSet,missing-method	getFeatures-methods
getFeatures,ExpressionSet,NULL-method	getFeatures-methods
getFeatures,ExpressionSet,vector-method	getFeatures-methods
getFeatures,matrix,vector-method	getFeatures-methods
getFeatures,missing,missing-method	getFeatures-methods
getFeatures,vector,missing-method	getFeatures-methods
getFeatures,vector,NULL-method	getFeatures-methods
getFeatures,vector,vector-method	getFeatures-methods
getFeatures-methods	getFeatures-methods
getSamples	getSamples
getSamples,ExpressionSet,missing-method	getSamples-methods
getSamples,ExpressionSet,NULL-method	getSamples-methods
getSamples,ExpressionSet,vector-method	getSamples-methods
getSamples,matrix,missing-method	getSamples-methods
getSamples,matrix,NULL-method	getSamples-methods
getSamples,matrix,vector-method	getSamples-methods
getSamples,missing,missing-method	getSamples-methods
getSamples,vector,missing-method	getSamples-methods
getSamples,vector,NULL-method	getSamples-methods
getSamples,vector,vector-method	getSamples-methods
getSamples-methods	getSamples-methods
plotBins	plotBins
plotBins,ExpressionSet,ExpressionSet-method	plotBins-methods
plotBins,ExpressionSet,missing-method	plotBins-methods
plotBins,ExpressionSet,vector-method	plotBins-methods
plotBins,matrix,missing-method	plotBins-methods
plotBins,missing,missing-method	plotBins-methods
plotBins,vector,ExpressionSet-method	plotBins-methods
plotBins,vector,missing-method	plotBins-methods
plotBins,vector,vector-method	plotBins-methods
plotBins-methods	plotBins-methods
plotChip	plotChip
plotChip,ExpressionSet,ExpressionSet,missing-method	plotChip-methods
plotChip,ExpressionSet,missing,missing-method	plotChip-methods
plotChip,ExpressionSet,vector,missing-method	plotChip-methods
plotChip,matrix,missing,missing-method	plotChip-methods
plotChip,missing,missing,missing-method	plotChip-methods
plotChip,vector,vector,ExpressionSet-method	plotChip-methods
plotChip,vector,vector,vector-method	plotChip-methods
plotChip-methods	plotChip-methods
plotFeature	plotFeature
plotFeature,ExpressionSet,missing-method	plotFeature-methods
plotFeature,ExpressionSet,vector-method	plotFeature-methods
plotFeature,matrix,vector-method	plotFeature-methods
plotFeature,missing,missing-method	plotFeature-methods
plotFeature-methods	plotFeature-methods
plotPairs	plotPairs
plotPairs,ExpressionSet-method	plotPairs-methods
plotPairs,matrix-method	plotPairs-methods
plotPairs,missing-method	plotPairs-methods
plotPairs-methods	plotPairs-methods
quantileNormalize	quantileNormalize
quantileNormalize,ExpressionSet,ExpressionSet-method	quantileNormalize-methods
quantileNormalize,ExpressionSet,missing-method	quantileNormalize-methods
quantileNormalize,ExpressionSet,vector-method	quantileNormalize-methods
quantileNormalize,matrix,missing-method	quantileNormalize-methods
quantileNormalize,missing,missing-method	quantileNormalize-methods
quantileNormalize,vector,ExpressionSet-method	quantileNormalize-methods
quantileNormalize,vector,missing-method	quantileNormalize-methods
quantileNormalize,vector,vector-method	quantileNormalize-methods
quantileNormalize-methods	quantileNormalize-methods
readDesign	readDesign
readDesign,character,character,character-method	readDesign-methods
readDesign,character,character,ExpressionSet-method	readDesign-methods
readDesign,missing,missing,missing-method	readDesign-methods
readDesign,vector,missing,missing-method	readDesign-methods
readDesign,vector,vector,missing-method	readDesign-methods
readDesign-methods	readDesign-methods
readPairs	readPairs
readPairs,character,character,character-method	readPairs-methods
readPairs,character,character,ExpressionSet-method	readPairs-methods
readPairs,missing,missing,missing-method	readPairs-methods
readPairs,vector,missing,missing-method	readPairs-methods
readPairs,vector,vector,missing-method	readPairs-methods
readPairs-methods	readPairs-methods
readSampleKey	readSampleKey
