Package: GeneSelector
Version: 2.10.0
Date: 2009-16-10
Title: Stability and Aggregation of ranked gene lists
Author: Martin Slawski <ms@cs.uni-sb.de>, Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>. 
Maintainer: Martin Slawski <ms@cs.uni-sb.de>
Depends: R (>= 2.5.1), methods, stats, Biobase
Suggests: multtest, siggenes, samr, limma
Imports: multtest, siggenes, samr, limma
Description: The term 'GeneSelector' refers to a filter selecting those genes 
	     which are consistently identified as differentially 
	     expressed using various statistical procedures. 
             'Selected' genes are those present
             at the top of the list in various ranking
             methods (currently 14). In addition, the stability
             of the findings can be taken into account in the final 
	     ranking by examining perturbed
             versions of the original data set, e.g. by leaving
             samples, swapping class labels, generating bootstrap
             replicates or adding noise. Given multiple ranked lists, one can
	     use aggregation methods in order to find a synthesis.
Collate: classes.r GenerateFoldMatrix.r GenerateBootMatrix.r
        RepeatRanking.r GetStabilityOverlap.r GetStabilityDistance.r
        GetStabilityUnion.r AggregateSimple.r AggregatePenalty.r
        AggregateMC.r AggregateSVD.r GeneSelector.r HeatmapRankings.r
        RankingBaldiLong.r RankingEbam.r RankingFC.r RankingFoxDimmic.r
        RankingLimma.r RankingPermutation.r RankingSam.r
        RankingShrinkageT.r RankingSoftthresholdT.r RankingTstat.r
        RankingWelchT.r RankingWilcEbam.r RankingWilcoxon.r internals.r
License: GPL (>= 2)
biocViews: Statistics, DifferentialExpression
Packaged: 2013-04-04 10:16:37 UTC; biocbuild
Built: R 3.0.0; i386-w64-mingw32; 2013-04-04 16:53:41 UTC; windows
Archs: i386, x64
