86ac0f4f0f0d6a8ae11dfa33bf9c93bc *CITATION
a066c920c09be638062a287fd4d0f15b *DESCRIPTION
b82654eac6dcddc23956d6d6b100e279 *INDEX
dd3d6a059122c8f512e50c8286b1c9a2 *Meta/Rd.rds
221d971d4823fedd53bac789e8d0d525 *Meta/data.rds
91970511be3839856d08cd8e3f9467eb *Meta/hsearch.rds
baeab89602dacfede0b59b465d0b9dcc *Meta/links.rds
f3b57f4d52ad3c5806245607cdcdd628 *Meta/nsInfo.rds
eb6b3287282c4b5b96fa443cdb576b05 *Meta/package.rds
1ea7be003d9f5bbf13879d4415cc1b44 *Meta/vignette.rds
bee1921d8c184d8e4b0d41d14d5f76cb *NAMESPACE
ba4b2fc56c0a69070552b1e25d341286 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/GWASTools
5cb31a4c1af3b9b24d4d183f605e1698 *R/GWASTools.rdb
551201f2f3d5489847aeee9229f90211 *R/GWASTools.rdx
5921db41ca5e9777fb353b691a1ff605 *data/Rdata.rdb
ceca68ef96d65d3657475a46717bf2a1 *data/Rdata.rds
f7e87ff3d0879a95de2953d92321f3ba *data/Rdata.rdx
946d017b33e55550c4e3a8ceb5d2d326 *doc/Affymetrix.R
f5a57df19ed24da8e8ae778d42918c31 *doc/Affymetrix.Rnw
61ee7b712a5e9c0fdf3d631b7311d606 *doc/Affymetrix.pdf
886b42a089308c7f308c67685ff46bd0 *doc/DataCleaning.R
4a902f8f051821c46e507c44663751ce *doc/DataCleaning.Rnw
8dc56f6a637d8fc66519ecc18257dd0f *doc/DataCleaning.pdf
fcb9e20a4c4c7a7f1a3afbf2f36cbaa5 *doc/Formats.Rnw
f6b7177172c430cf36858d555117d5a6 *doc/Formats.pdf
bb97c7512ca9847286bfaa23042ffc25 *doc/VCF.R
a739c1e8497134e59277483b009ea20e *doc/VCF.Rnw
28a431753cae3f812401355a784aba44 *doc/VCF.pdf
6b4ee1a8f6dd94d7db110db667b53a84 *doc/index.html
42ebe6a37417705ab1d1248fb0f9da6d *help/AnIndex
ee887177a97f0e39ba95f10c1db9b1a2 *help/GWASTools.rdb
f6e70bddcd7d966d9f1bfaa57896ca19 *help/GWASTools.rdx
4124751ec0fb6f21dfafee0becab0ab3 *help/aliases.rds
1fd38f1e8f2b366b075403033cb31c6e *help/paths.rds
3b0207dd8ee212e18ed40ca10f420e50 *html/00Index.html
444535b9cb76ddff1bab1e1865a3fb14 *html/R.css
e3b54d351220730d601e300dfc9589aa *unitTests/BAFfromClusterMeans_test.R
d00b35111cad21912c242af66fd70464 *unitTests/BAFfromGenotypes_test.R
f917182279081c6079ed53691aa5e9f3 *unitTests/GdsGenotypeReader_test.R
1c74735c6994e86ce7faa9505b7084cc *unitTests/GdsReader_test.R
d2e019e1edad3475bec787f4519332c7 *unitTests/GenotypeData_test.R
c6f9428a027a52be005e5d7ecee983cb *unitTests/IntensityData_test.R
128c7369072ea96ed44ecb6a496a0917 *unitTests/MatrixGenotypeReader_test.R
9ccea588eadf2dc2efdf62e9e29486d7 *unitTests/NcdfGenotypeReader_test.R
fa559973b54d74e1066b436e2fb691f5 *unitTests/NcdfIntensityReader_test.R
3c375ca7cde6287748d8a6106b909bd2 *unitTests/NcdfReader_test.R
67a1ce964be00d7180723bba030a3031 *unitTests/ScanAnnotationDataFrame_test.R
31212b6719dbe4e1556ea81d2dc3550d *unitTests/ScanAnnotationSQLite_test.R
8eaed4ce544ba69271ec222a101762f1 *unitTests/SnpAnnotationDataFrame_test.R
fc684da1f017224562349f3a62e11dda *unitTests/SnpAnnotationSQLite_test.R
d7be97fe6770dfb93111ad322b541802 *unitTests/alleleFrequency_test.R
8d89dc9ff9002416ca4cfcb4d072fc54 *unitTests/allequal_test.R
57398362ee4a3abeff7db5717d36828d *unitTests/anomDetectBAF_test.R
dc188b62be9fa7f6cb0cb54f5ecff29b *unitTests/apartSnpSelection_test.R
6eb9da30c01a2a500f79d0d061c50c2e *unitTests/batchChisqTest_test.R
136ed11a971891aaa450b90283c59bab *unitTests/batchFisherTest_test.R
171c24a2a4e4038d73a642c6c6150b6c *unitTests/chromIntensityPlot_test.R
508d819138c45e54c9bbd94c6adc59a7 *unitTests/convertNcdfGds_test.R
0bc640ab800f871fe7dfb60858ed8f71 *unitTests/duplicateDiscordanceAcrossDatasets_test.R
046dbd32f423031510439124bff5b347 *unitTests/duplicateDiscordance_test.R
905598138226fdc90c7e5bd3f553c024 *unitTests/findBAFvariance_test.R
0ad36d007994f4199f2a85f5e09698f2 *unitTests/genotypeToCharacter_test.R
30a56126cc8657ec956f96c87da4177e *unitTests/getobj_test.R
f8a135a1fcf3c0f383a1e60670baa28e *unitTests/hetByScanChrom_test.R
5a9474736f609b96247bc0b0a61342d6 *unitTests/hetBySnpSex_test.R
0d7c0a72a92af6b3a3b91a5958cb6324 *unitTests/ibdPlot_test.R
a15a23f3e5d975b61df1eb5b7c2c93b6 *unitTests/meanIntensityByScanChrom_test.R
41a5a01831ecd828cda4af98007c366e *unitTests/missingGenotypeByScanChrom_test.R
a3205fde64f25df663b03c972970a489 *unitTests/missingGenotypeBySnpSex_test.R
68d9419d296f7595d112f8bd3bacebe0 *unitTests/ncdfAddData_test.R
bc096c941f8988ada867da3569d0113b *unitTests/ncdfAddIntensity_test.R
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e7b61a3490a9cefbe815328cd64c8d7f *unitTests/ncdfCheckIntensity_test.R
818c940bb80589e44e8e2684eba6f964 *unitTests/ncdfCreate_test.R
2cdf3768627ea1405faba4f9bf6d9b48 *unitTests/ncdfImputedDosage_test.R
5455e8e38e61067930deec3f769e4b51 *unitTests/ncdfSetMissingGenotypes_test.R
b27b180ad052d8be3b5dd15f47a8c43d *unitTests/ncdfSubset_test.R
75f2bc451229cdcd823fbe2619351b69 *unitTests/pedigreeCheck_test.R
378ec7ef99e27b32ab3741df3b06aeae *unitTests/pedigreeMaxUnrelated_test.R
7e5552ded02655b72a473d52713859ed *unitTests/pedigreePairwiseRelatedness_test.R
7af18ead5fc1bc35299f91794dbde1f3 *unitTests/plinkUtils_test.R
96ce42cffea1f48d7a72f03fa48ec01e *unitTests/pseudoautoIntensityPlot_test.R
86e76d76ab0a662c41685d45623639b0 *unitTests/qualityScoreByScan_test.R
64a23402e8040c62d420a6205dbec0df *unitTests/qualityScoreBySnp_test.R
87cce94804e502b6ffda8222fbdf875a *unitTests/saveas_test.R
dc43201f321aa4549c54dc290343d110 *unitTests/snpStats_test.R
